Issues

• Look into Genovese et al 2024 indel liftover tool

  GenomicMedLab/agct#61 · Filter by author jsstevenson opened on Oct 7, 2025
  1

• How is ambiguous liftover handled?

  GenomicMedLab/agct#58 · Filter by author jsstevenson opened on Aug 28, 2025

• Liftover handling when when input is on the Positive Strand and output is on the Negative strand

  bug
  GenomicMedLab/agct#56 · Filter by author jennifer-bowser opened on Jul 18, 2025
  1

• hg19->hg38 chr8 24811064 should lift over but doesn't

  bug
  GenomicMedLab/agct#54 · Filter by author jsstevenson opened on Jul 18, 2025

• Validate liftover results against dbSNP

  enhancement
  GenomicMedLab/agct#53 · Filter by author jsstevenson opened on Jul 4, 2025

• Validate liftover results against pyliftover

  enhancement
  GenomicMedLab/agct#51 · Filter by author jsstevenson opened on Jun 22, 2025

• Validate liftover results against ClinVar mappings

  enhancement
  GenomicMedLab/agct#50 · Filter by author jsstevenson opened on Jun 22, 2025

• Use SCM to set version

  priority:lowstale-exempt
  GenomicMedLab/agct#37 · Filter by author jsstevenson opened on Aug 7, 2024
  1