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Copy pathTestDensDepInfestation.cpp
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1935 lines (1767 loc) · 75.9 KB
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//---------------------------------------------------------------------------
// TestDensDepInfestation.cpp
//---------------------------------------------------------------------------
#include "TestDensDepInfestation.h"
#include <gtest/gtest.h>
#include "SimManager.h"
#include "Grid.h"
#include "TreePopulation.h"
#include "Storm.h"
#include <fstream>
#include <sstream>
#include <math.h>
////////////////////////////////////////////////////////////////////////////
// TestErrorProcessing()
////////////////////////////////////////////////////////////////////////////
TEST(DensDepInfestation, TestErrorProcessing)
{
clSimManager * p_oSimManager = new clSimManager( 7, 1, "" );
try
{
p_oSimManager->ReadFile( WriteDensDepInfestationXMLErrorFile1() );
FAIL() << "TestDensDepInfestation error processing didn't catch error for WriteDensDepInfestationXMLErrorFile1.";
}
catch ( modelErr& err )
{
if ( err.sFunction.compare("clDensDepInfestation::ReadParFile" ) != 0 )
{
FAIL() << "TestDensDepInfestation error processing caught wrong error for WriteDensDepInfestationXMLErrorFile1.";
}
;
}
try
{
p_oSimManager->ReadFile( WriteDensDepInfestationXMLErrorFile2() );
FAIL() << "TestDensDepInfestation error processing didn't catch error for WriteDensDepInfestationXMLErrorFile2.";
}
catch ( modelErr& err )
{
if ( err.sFunction.compare("clDensDepInfestation::RegisterTreeDataMembers" ) != 0 )
{
FAIL() << "TestDensDepInfestation error processing caught wrong error for WriteDensDepInfestationXMLErrorFile2.";
}
;
}
try
{
p_oSimManager->ReadFile( WriteDensDepInfestationXMLErrorFile3() );
FAIL() << "TestDensDepInfestation error processing didn't catch error for WriteDensDepInfestationXMLErrorFile3.";
}
catch ( modelErr& err )
{
if ( err.sFunction.compare("clDensDepInfestation::ReadParFile" ) != 0 )
{
FAIL() << "TestDensDepInfestation error processing caught wrong error for WriteDensDepInfestationXMLErrorFile3.";
}
;
}
try
{
p_oSimManager->ReadFile( WriteDensDepInfestationXMLErrorFile4() );
FAIL() << "TestDensDepInfestation error processing didn't catch error for WriteDensDepInfestationXMLErrorFile4.";
}
catch ( modelErr& err )
{
if ( err.sFunction.compare("clDensDepInfestation::ReadParFile" ) != 0 )
{
FAIL() << "TestDensDepInfestation error processing caught wrong error for WriteDensDepInfestationXMLErrorFile4.";
}
;
}
try
{
p_oSimManager->ReadFile( WriteDensDepInfestationXMLErrorFile5() );
FAIL() << "TestDensDepInfestation error processing didn't catch error for WriteDensDepInfestationXMLErrorFile5.";
}
catch ( modelErr& err )
{
if ( err.sFunction.compare("clDensDepInfestation::ReadParFile" ) != 0 )
{
FAIL() << "TestDensDepInfestation error processing caught wrong error for WriteDensDepInfestationXMLErrorFile5.";
}
;
}
try
{
p_oSimManager->ReadFile( WriteDensDepInfestationXMLErrorFile6() );
FAIL() << "TestDensDepInfestation error processing didn't catch error for WriteDensDepInfestationXMLErrorFile6.";
}
catch ( modelErr& err )
{
if ( err.sFunction.compare("clDensDepInfestation::ReadParFile" ) != 0 )
{
FAIL() << "TestDensDepInfestation error processing caught wrong error for WriteDensDepInfestationXMLErrorFile6.";
}
;
}
delete p_oSimManager;
}
/////////////////////////////////////////////////////////////////////////////
// TestNormalProcessingRun1()
/////////////////////////////////////////////////////////////////////////////
TEST(DensDepInfestation, TestNormalProcessingRun1)
{
clTreePopulation * p_oPop;
long iInfested;
long *p_iResistant = new long[3], *p_iCondSusc = new long[3], *p_iResistant2 = new long[3], *p_iCondSusc2 = new long[3];
float fDbh, fX, fY;
int i, iInf;
clSimManager * p_oSimManager = new clSimManager( 7, 1, "" );
try {
//Feed our file to the sim manager
p_oSimManager->ReadFile( WriteDensDepInfestationXMLFile1());
//Get the tree population
p_oPop = ( clTreePopulation * ) p_oSimManager->GetPopulationObject( "treepopulation" );
//---------------------------------------------------------------------
//Add 1000 trees of each species, to start.
// Trees below minimum infestibility
/*fDbh = 4;
for ( i = 0; i < 1000; i++ ) {
fX = clModelMath::GetRand() * 99;
fY = clModelMath::GetRand() * 99;
p_oPop->CreateTree( fX, fY, 0, clTreePopulation::sapling, fDbh );
p_oPop->CreateTree( fX, fY, 1, clTreePopulation::sapling, fDbh );
p_oPop->CreateTree( fX, fY, 2, clTreePopulation::sapling, fDbh );
}*/
// Bigger trees
fDbh = 7.6;
for ( i = 0; i < 1000; i++ ) {
fX = clModelMath::GetRand() * 99;
fY = clModelMath::GetRand() * 99;
p_oPop->CreateTree( fX, fY, 0, clTreePopulation::sapling, fDbh );
}
fDbh = 6;
for ( i = 0; i < 1000; i++ ) {
fX = clModelMath::GetRand() * 99;
fY = clModelMath::GetRand() * 99;
p_oPop->CreateTree( fX, fY, 1, clTreePopulation::sapling, fDbh );
}
fDbh = 4;
for ( i = 0; i < 1000; i++ ) {
fX = clModelMath::GetRand() * 99;
fY = clModelMath::GetRand() * 99;
p_oPop->CreateTree( fX, fY, 2, clTreePopulation::sapling, fDbh );
}
//---------------------------------------------------------------------
// Timestep 1
// Infestation not yet started.
p_oSimManager->RunSim( 1 );
clTreeSearch *p_oAllTrees = p_oPop->Find( "all" );
clTree *p_oTree = p_oAllTrees->NextTree();
while (p_oTree) {
if (0 != p_oTree->GetSpecies()) {
p_oTree->GetValue(p_oPop->GetIntDataCode("YearsInfested", p_oTree->GetSpecies(), p_oTree->GetType()), &iInf);
EXPECT_EQ(0, iInf);
}
p_oTree = p_oAllTrees->NextTree();
}
//---------------------------------------------------------------------
// Timestep 2
// Infestation not yet started.
p_oSimManager->RunSim( 1 );
p_oAllTrees = p_oPop->Find( "all" );
p_oTree = p_oAllTrees->NextTree();
while (p_oTree) {
if (0 != p_oTree->GetSpecies()) {
p_oTree->GetValue(p_oPop->GetIntDataCode("YearsInfested", p_oTree->GetSpecies(), p_oTree->GetType()), &iInf);
EXPECT_EQ(0, iInf);
}
p_oTree = p_oAllTrees->NextTree();
}
//---------------------------------------------------------------------
// Timestep 3
// First year of infestation
p_oSimManager->RunSim( 1 );
p_oAllTrees = p_oPop->Find( "all" );
p_oTree = p_oAllTrees->NextTree();
iInfested = 0;
for (i = 0; i < 3; i++) {p_iResistant[i] = 0; p_iCondSusc[i] = 0;}
//Check resistance status
while (p_oTree) {
p_oTree->GetValue(p_oPop->GetDbhCode(p_oTree->GetSpecies(), p_oTree->GetType()), &fDbh);
if (0 != p_oTree->GetSpecies()) {
p_oTree->GetValue(p_oPop->GetIntDataCode("DensDepResistanceStatus", p_oTree->GetSpecies(), p_oTree->GetType()), &iInf);
if (iInf == resistant) p_iResistant[p_oTree->GetSpecies()]++;
else if (iInf == cond_susceptible) p_iCondSusc[p_oTree->GetSpecies()]++;
}
p_oTree = p_oAllTrees->NextTree();
}
//Species 2 resistant - 1% of 1000 trees = around 10
ASSERT_TRUE(p_iResistant[1] < 30);
//Species 3 resistant - 5% of 2000 trees = around 50
ASSERT_TRUE(p_iResistant[2] > 38 && p_iResistant[2] < 62);
//Species 2 conditionally susceptible - 20% of 1000 trees = around 200
ASSERT_TRUE(p_iCondSusc[1] > 180 && p_iCondSusc[1] < 220);
//Species 3 conditionally susceptible - 30% of 1000 trees = around 300
ASSERT_TRUE(p_iCondSusc[2] > 270 && p_iCondSusc[2] < 430);
//Check infestation
p_oAllTrees->StartOver();
p_oTree = p_oAllTrees->NextTree();
while (p_oTree) {
p_oTree->GetValue(p_oPop->GetDbhCode(p_oTree->GetSpecies(), p_oTree->GetType()), &fDbh);
if (0 != p_oTree->GetSpecies()) {
p_oTree->GetValue(p_oPop->GetIntDataCode("YearsInfested", p_oTree->GetSpecies(), p_oTree->GetType()), &iInf);
if (fDbh < 5) {
EXPECT_EQ(0, iInf);
} else {
if (iInf > 0) {
iInfested++;
EXPECT_EQ(1, iInf);
}
}
}
p_oTree = p_oAllTrees->NextTree();
}
//Should be about 589 infested
ASSERT_TRUE(fabs(iInfested - 589.0)/ iInfested < 0.1 );
//---------------------------------------------------------------------
// Timestep 4
// Second year of infestation
p_oSimManager->RunSim( 1 );
p_oAllTrees = p_oPop->Find( "all" );
p_oTree = p_oAllTrees->NextTree();
iInfested = 0;
for (i = 0; i < 3; i++) {p_iResistant2[i] = 0; p_iCondSusc2[i] = 0;}
//Check resistance status is the same
while (p_oTree) {
p_oTree->GetValue(p_oPop->GetDbhCode(p_oTree->GetSpecies(), p_oTree->GetType()), &fDbh);
if (0 != p_oTree->GetSpecies()) {
p_oTree->GetValue(p_oPop->GetIntDataCode("DensDepResistanceStatus", p_oTree->GetSpecies(), p_oTree->GetType()), &iInf);
if (iInf == resistant) p_iResistant2[p_oTree->GetSpecies()]++;
else if (iInf == cond_susceptible) p_iCondSusc2[p_oTree->GetSpecies()]++;
}
p_oTree = p_oAllTrees->NextTree();
}
for (i = 0; i < 3; i++) {
EXPECT_EQ(p_iResistant[i], p_iResistant2[i]);
EXPECT_EQ(p_iCondSusc[i], p_iCondSusc2[i]);
}
delete[] p_iCondSusc2; delete[] p_iResistant2;
//Check infestation
p_oAllTrees->StartOver();
p_oTree = p_oAllTrees->NextTree();
while (p_oTree) {
p_oTree->GetValue(p_oPop->GetDbhCode(p_oTree->GetSpecies(), p_oTree->GetType()), &fDbh);
if (0 != p_oTree->GetSpecies()) {
p_oTree->GetValue(p_oPop->GetIntDataCode("YearsInfested", p_oTree->GetSpecies(), p_oTree->GetType()), &iInf);
if (fDbh < 5) {
EXPECT_EQ(0, iInf);
} else {
if (iInf > 0) {
iInfested++;
}
}
}
p_oTree = p_oAllTrees->NextTree();
}
//Should be about 1225 infested
ASSERT_TRUE(fabs(iInfested - 1225.0)/ iInfested < 0.1 );
//---------------------------------------------------------------------
// Timestep 5
// Third year of infestation
p_oSimManager->RunSim( 1 );
p_oAllTrees = p_oPop->Find( "all" );
p_oTree = p_oAllTrees->NextTree();
iInfested = 0;
//Check infestation
p_oAllTrees->StartOver();
p_oTree = p_oAllTrees->NextTree();
while (p_oTree) {
p_oTree->GetValue(p_oPop->GetDbhCode(p_oTree->GetSpecies(), p_oTree->GetType()), &fDbh);
if (0 != p_oTree->GetSpecies()) {
p_oTree->GetValue(p_oPop->GetIntDataCode("YearsInfested", p_oTree->GetSpecies(), p_oTree->GetType()), &iInf);
if (fDbh < 5) {
EXPECT_EQ(0, iInf);
} else {
if (iInf > 0) {
iInfested++;
}
}
}
p_oTree = p_oAllTrees->NextTree();
}
//Should be about 1663 infested
ASSERT_TRUE(fabs(iInfested - 1663.0)/ iInfested < 0.1 );
//---------------------------------------------------------------------
// Timestep 6
// Fourth year of infestation
p_oSimManager->RunSim( 1 );
p_oAllTrees = p_oPop->Find( "all" );
p_oTree = p_oAllTrees->NextTree();
iInfested = 0;
//Check infestation
p_oAllTrees->StartOver();
p_oTree = p_oAllTrees->NextTree();
while (p_oTree) {
p_oTree->GetValue(p_oPop->GetDbhCode(p_oTree->GetSpecies(), p_oTree->GetType()), &fDbh);
if (0 != p_oTree->GetSpecies()) {
p_oTree->GetValue(p_oPop->GetIntDataCode("YearsInfested", p_oTree->GetSpecies(), p_oTree->GetType()), &iInf);
if (fDbh < 5) {
EXPECT_EQ(0, iInf);
} else {
if (iInf > 0) {
iInfested++;
}
}
}
p_oTree = p_oAllTrees->NextTree();
}
//Should be about 1871 infested
ASSERT_TRUE(fabs(iInfested - 1871.0)/ iInfested < 0.1 );
//---------------------------------------------------------------------
// Timestep 7
// Fifth year of infestation
// At this point, only resistant trees should be left
p_oSimManager->RunSim( 1 );
p_oAllTrees = p_oPop->Find( "all" );
p_oTree = p_oAllTrees->NextTree();
iInfested = 0;
//Check infestation
p_oAllTrees->StartOver();
p_oTree = p_oAllTrees->NextTree();
while (p_oTree) {
p_oTree->GetValue(p_oPop->GetDbhCode(p_oTree->GetSpecies(), p_oTree->GetType()), &fDbh);
if (0 != p_oTree->GetSpecies()) {
p_oTree->GetValue(p_oPop->GetIntDataCode("YearsInfested", p_oTree->GetSpecies(), p_oTree->GetType()), &iInf);
if (fDbh < 5) {
EXPECT_EQ(0, iInf);
} else {
if (iInf > 0) {
iInfested++;
} else {
p_oTree->GetValue(p_oPop->GetIntDataCode("DensDepResistanceStatus", p_oTree->GetSpecies(), p_oTree->GetType()), &iInf);
EXPECT_EQ(iInf, resistant);
}
}
}
p_oTree = p_oAllTrees->NextTree();
}
EXPECT_EQ(iInfested, 2000 - (p_iResistant[1] + p_iResistant[2]));
delete[] p_iResistant;
delete[] p_iCondSusc;
delete p_oSimManager;
} catch (modelErr &e) {
delete[] p_iResistant;
delete[] p_iCondSusc;
delete p_oSimManager;
FAIL() << "Testing failed in function: " << e.sFunction << " with message: " << e.sMoreInfo;
}
}
/////////////////////////////////////////////////////////////////////////////
// TestNormalProcessingRun2()
/////////////////////////////////////////////////////////////////////////////
TEST(DensDepInfestation, TestNormalProcessingRun2)
{
clTreePopulation * p_oPop;
long iInfested;
float fDbh, fX, fY;
int i, iInf;
clSimManager * p_oSimManager = new clSimManager( 7, 1, "" );
try {
//Feed our file to the sim manager
p_oSimManager->ReadFile( WriteDensDepInfestationXMLFile2());
//Get the tree population
p_oPop = ( clTreePopulation * ) p_oSimManager->GetPopulationObject( "treepopulation" );
//---------------------------------------------------------------------
//Add 1000 trees of each species, to start.
// Trees below minimum infestibility
fDbh = 4;
for ( i = 0; i < 1000; i++ ) {
fX = clModelMath::GetRand() * 99;
fY = clModelMath::GetRand() * 99;
p_oPop->CreateTree( fX, fY, 0, clTreePopulation::sapling, fDbh );
p_oPop->CreateTree( fX, fY, 1, clTreePopulation::sapling, fDbh );
p_oPop->CreateTree( fX, fY, 2, clTreePopulation::sapling, fDbh );
}
// Bigger trees
fDbh = 13;
for ( i = 0; i < 1000; i++ ) {
fX = clModelMath::GetRand() * 99;
fY = clModelMath::GetRand() * 99;
p_oPop->CreateTree( fX, fY, 0, clTreePopulation::sapling, fDbh );
}
fDbh = 6;
for ( i = 0; i < 1000; i++ ) {
fX = clModelMath::GetRand() * 99;
fY = clModelMath::GetRand() * 99;
p_oPop->CreateTree( fX, fY, 1, clTreePopulation::sapling, fDbh );
}
fDbh = 12;
for ( i = 0; i < 1000; i++ ) {
fX = clModelMath::GetRand() * 99;
fY = clModelMath::GetRand() * 99;
p_oPop->CreateTree( fX, fY, 1, clTreePopulation::sapling, fDbh );
}
fDbh = 8;
for ( i = 0; i < 1000; i++ ) {
fX = clModelMath::GetRand() * 99;
fY = clModelMath::GetRand() * 99;
p_oPop->CreateTree( fX, fY, 2, clTreePopulation::sapling, fDbh );
}
fDbh = 17;
for ( i = 0; i < 1000; i++ ) {
fX = clModelMath::GetRand() * 99;
fY = clModelMath::GetRand() * 99;
p_oPop->CreateTree( fX, fY, 2, clTreePopulation::sapling, fDbh );
}
//---------------------------------------------------------------------
// Timestep 1
// First year of infestation
p_oSimManager->RunSim( 1 );
clTreeSearch *p_oAllTrees = p_oPop->Find( "all" );
clTree *p_oTree = p_oAllTrees->NextTree();
iInfested = 0;
//Check infestation
while (p_oTree) {
p_oTree->GetValue(p_oPop->GetDbhCode(p_oTree->GetSpecies(), p_oTree->GetType()), &fDbh);
if (0 != p_oTree->GetSpecies()) {
p_oTree->GetValue(p_oPop->GetIntDataCode("YearsInfested", p_oTree->GetSpecies(), p_oTree->GetType()), &iInf);
if ((p_oTree->GetSpecies() == 1 && fDbh < 10) ||
(p_oTree->GetSpecies() == 2 && fDbh < 15)) {
EXPECT_EQ(0, iInf);
} else {
if (iInf > 0) {
iInfested++;
EXPECT_EQ(1, iInf);
}
}
}
p_oTree = p_oAllTrees->NextTree();
}
//Should be about 1179 infested
ASSERT_TRUE(fabs(iInfested - 1179.0)/ iInfested < 0.1 );
//---------------------------------------------------------------------
// Timestep 2
// Second year of infestation
p_oSimManager->RunSim( 1 );
p_oAllTrees = p_oPop->Find( "all" );
p_oTree = p_oAllTrees->NextTree();
iInfested = 0;
//Check infestation
while (p_oTree) {
p_oTree->GetValue(p_oPop->GetDbhCode(p_oTree->GetSpecies(), p_oTree->GetType()), &fDbh);
if (0 != p_oTree->GetSpecies()) {
p_oTree->GetValue(p_oPop->GetIntDataCode("YearsInfested", p_oTree->GetSpecies(), p_oTree->GetType()), &iInf);
if (fDbh < 5) {
ASSERT_EQ(0, iInf);
} else if ((p_oTree->GetSpecies() == 1 && fDbh > 10) ||
(p_oTree->GetSpecies() == 2 && fDbh > 15)) {
ASSERT_GT(iInf, 0);
iInfested++;
} else {
if (iInf > 0) {
iInfested++;
}
}
}
p_oTree = p_oAllTrees->NextTree();
}
//Should be about 2499 infested
ASSERT_TRUE(fabs(iInfested - 2499.0)/ iInfested < 0.1 );
delete p_oSimManager;
} catch (modelErr &e) {
delete p_oSimManager;
FAIL() << "Testing failed in function: " << e.sFunction << " with message: " << e.sMoreInfo;
}
}
/////////////////////////////////////////////////////////////////////////////
// TestNormalProcessingRun3()
/////////////////////////////////////////////////////////////////////////////
TEST(DensDepInfestation, TestNormalProcessingRun3)
{
clTreePopulation * p_oPop;
long *p_iYrInfested = new long[6]; //Number assigned each year of infestation
long iInfested;
float fDbh;
int i, iInf;
for (i = 0; i < 6; i++) p_iYrInfested[i] = 0;
clSimManager * p_oSimManager = new clSimManager( 7, 1, "" );
try {
//Feed our file to the sim manager
p_oSimManager->ReadFile( WriteDensDepInfestationXMLFile3());
//Get the tree population
p_oPop = ( clTreePopulation * ) p_oSimManager->GetPopulationObject( "treepopulation" );
//---------------------------------------------------------------------
// Timestep 1
// Sixth year of infestation
p_oSimManager->RunSim( 1 );
clTreeSearch *p_oAllTrees = p_oPop->Find( "all" );
clTree *p_oTree = p_oAllTrees->NextTree();
iInfested = 0;
//Check infestation
while (p_oTree) {
p_oTree->GetValue(p_oPop->GetDbhCode(p_oTree->GetSpecies(), p_oTree->GetType()), &fDbh);
if (0 == p_oTree->GetSpecies()) {
p_oTree->GetValue(p_oPop->GetIntDataCode("YearsInfested", p_oTree->GetSpecies(), p_oTree->GetType()), &iInf);
EXPECT_LT(iInf, 7);
if (iInf > 0) {
iInfested++;
p_iYrInfested[(iInf-1)]++;
}
}
p_oTree = p_oAllTrees->NextTree();
}
//Should be about 841 infested
ASSERT_TRUE(fabs(iInfested - 841.0)/ iInfested < 0.1 );
//Infested for 1 year: about 66
ASSERT_TRUE(fabs(p_iYrInfested[0] - 66.0)/ p_iYrInfested[0] < 0.15 );
//Infested for 2 years: about 89
ASSERT_TRUE(fabs(p_iYrInfested[1] - 89.0)/ p_iYrInfested[2] < 0.1 );
//Infested for 3 years: about 113
ASSERT_TRUE(fabs(p_iYrInfested[2] - 113.0)/ p_iYrInfested[2] < 0.1 );
//Infested for 4 years: about 134
ASSERT_TRUE(fabs(p_iYrInfested[3] - 134.0)/ p_iYrInfested[3] < 0.1 );
//Infested for 5 years: about 143
ASSERT_TRUE(fabs(p_iYrInfested[4] - 143.0)/ p_iYrInfested[4] < 0.1 );
//Infested for 6 years: about 294
ASSERT_TRUE(fabs(p_iYrInfested[5] - 294.0)/ p_iYrInfested[5] < 0.1 );
delete[] p_iYrInfested;
delete p_oSimManager;
} catch (modelErr &e) {
delete[] p_iYrInfested;
delete p_oSimManager;
FAIL() << "Testing failed in function: " << e.sFunction << " with message: " << e.sMoreInfo;
}
}
/////////////////////////////////////////////////////////////////////////////
// TestNormalProcessingRun4()
// Tests end date to infestation
/////////////////////////////////////////////////////////////////////////////
TEST(DensDepInfestation, TestNormalProcessingRun4)
{
clTreePopulation * p_oPop;
long iInfested;
float fDbh;
int i, iInf;
clSimManager * p_oSimManager = new clSimManager( 7, 1, "" );
try {
//Feed our file to the sim manager
p_oSimManager->ReadFile( WriteDensDepInfestationXMLFile4());
//Get the tree population
p_oPop = ( clTreePopulation * ) p_oSimManager->GetPopulationObject( "treepopulation" );
//---------------------------------------------------------------------
// Timestep 1
p_oSimManager->RunSim( 1 );
clTreeSearch *p_oAllTrees = p_oPop->Find( "all" );
clTree *p_oTree = p_oAllTrees->NextTree();
iInfested = 0;
//Check infestation
while (p_oTree) {
p_oTree->GetValue(p_oPop->GetDbhCode(p_oTree->GetSpecies(), p_oTree->GetType()), &fDbh);
if (0 == p_oTree->GetSpecies()) {
p_oTree->GetValue(p_oPop->GetIntDataCode("YearsInfested", p_oTree->GetSpecies(), p_oTree->GetType()), &iInf);
if (iInf > 0) {
iInfested++;
}
}
p_oTree = p_oAllTrees->NextTree();
}
//Should be about 294 infested
ASSERT_TRUE(fabs(iInfested - 294.0)/ iInfested < 0.1 );
//---------------------------------------------------------------------
// Timestep 2
p_oSimManager->RunSim( 1 );
p_oAllTrees = p_oPop->Find( "all" );
p_oTree = p_oAllTrees->NextTree();
iInfested = 0;
//Check infestation
while (p_oTree) {
p_oTree->GetValue(p_oPop->GetDbhCode(p_oTree->GetSpecies(), p_oTree->GetType()), &fDbh);
if (0 == p_oTree->GetSpecies()) {
p_oTree->GetValue(p_oPop->GetIntDataCode("YearsInfested", p_oTree->GetSpecies(), p_oTree->GetType()), &iInf);
if (iInf > 0) {
iInfested++;
}
}
p_oTree = p_oAllTrees->NextTree();
}
//Should be about 438 infested
ASSERT_TRUE(fabs(iInfested - 438.0)/ iInfested < 0.1 );
//---------------------------------------------------------------------
// Timestep 3
p_oSimManager->RunSim( 1 );
p_oAllTrees = p_oPop->Find( "all" );
p_oTree = p_oAllTrees->NextTree();
iInfested = 0;
//Check infestation
while (p_oTree) {
p_oTree->GetValue(p_oPop->GetDbhCode(p_oTree->GetSpecies(), p_oTree->GetType()), &fDbh);
if (0 == p_oTree->GetSpecies()) {
p_oTree->GetValue(p_oPop->GetIntDataCode("YearsInfested", p_oTree->GetSpecies(), p_oTree->GetType()), &iInf);
if (iInf > 0) {
iInfested++;
}
}
p_oTree = p_oAllTrees->NextTree();
}
//Should be about 572 infested
ASSERT_TRUE(fabs(iInfested - 572.0)/ iInfested < 0.1 );
//---------------------------------------------------------------------
// Timestep 4 - infestation ends
for (i = 0; i < 10; i++) {
p_oSimManager->RunSim( 1 );
p_oAllTrees = p_oPop->Find( "all" );
p_oTree = p_oAllTrees->NextTree();
iInfested = 0;
//Check infestation
while (p_oTree) {
p_oTree->GetValue(p_oPop->GetDbhCode(p_oTree->GetSpecies(), p_oTree->GetType()), &fDbh);
if (0 == p_oTree->GetSpecies()) {
p_oTree->GetValue(p_oPop->GetIntDataCode("YearsInfested", p_oTree->GetSpecies(), p_oTree->GetType()), &iInf);
ASSERT_EQ(0, iInf);
}
p_oTree = p_oAllTrees->NextTree();
}
}
delete p_oSimManager;
} catch (modelErr &e) {
delete p_oSimManager;
FAIL() << "Testing failed in function: " << e.sFunction << " with message: " << e.sMoreInfo;
}
}
/////////////////////////////////////////////////////////////////////////////
// WriteDensDepInfestationXMLFile1()
/////////////////////////////////////////////////////////////////////////////
const char* WriteDensDepInfestationXMLFile1()
{
using namespace std;
const char *cFileString = "TestFile1.xml";
//Open file to write to
std::fstream oOut;
oOut.open( cFileString, ios::out | ios::trunc );
WriteDensDepNormalProcessingCommonStuff(oOut);
oOut << "<behaviorList>"
<< "<behavior>"
<< "<behaviorName>DensDepInfestation</behaviorName>"
<< "<version>1</version>"
<< "<listPosition>1</listPosition>"
<< "<applyTo species=\"Species_2\" type=\"Adult\"/>"
<< "<applyTo species=\"Species_3\" type=\"Adult\"/>"
<< "<applyTo species=\"Species_2\" type=\"Sapling\"/>"
<< "<applyTo species=\"Species_3\" type=\"Sapling\"/>"
<< "</behavior>"
<< "<behavior>"
<< "<behaviorName>ConstRadialGrowth</behaviorName>"
<< "<version>1</version>"
<< "<listPosition>2</listPosition>"
<< "<applyTo species=\"Species_1\" type=\"Adult\"/>"
<< "<applyTo species=\"Species_2\" type=\"Adult\"/>"
<< "<applyTo species=\"Species_3\" type=\"Adult\"/>"
<< "<applyTo species=\"Species_1\" type=\"Sapling\"/>"
<< "<applyTo species=\"Species_2\" type=\"Sapling\"/>"
<< "<applyTo species=\"Species_3\" type=\"Sapling\"/>"
<< "<applyTo species=\"Species_1\" type=\"Seedling\"/>"
<< "<applyTo species=\"Species_2\" type=\"Seedling\"/>"
<< "<applyTo species=\"Species_3\" type=\"Seedling\"/>"
<< "</behavior>"
<< "</behaviorList>";
oOut << "<DensDepInfestation1>"
<< "<di_densDepInfMaxInfestation>1</di_densDepInfMaxInfestation>"
<< "<di_densDepInfA>0.2</di_densDepInfA>"
<< "<di_densDepInfBx>1</di_densDepInfBx>"
<< "<di_densDepInfBy>0.2</di_densDepInfBy>"
<< "<di_densDepInfMinDBH>"
<< "<di_ddimdVal species=\"Species_2\">5</di_ddimdVal>"
<< "<di_ddimdVal species=\"Species_3\">5</di_ddimdVal>"
<< "</di_densDepInfMinDBH>"
<< "<di_densDepInfCohortDBH>"
<< "<di_ddicdVal species=\"Species_2\">0</di_ddicdVal>"
<< "<di_ddicdVal species=\"Species_3\">0</di_ddicdVal>"
<< "</di_densDepInfCohortDBH>"
<< "<di_densDepInfPropResistant>"
<< "<di_ddiprVal species=\"Species_2\">0.01</di_ddiprVal>"
<< "<di_ddiprVal species=\"Species_3\">0.05</di_ddiprVal>"
<< "</di_densDepInfPropResistant>"
<< "<di_densDepInfPropCondSusceptible>"
<< "<di_ddipcsVal species=\"Species_2\">0.2</di_ddipcsVal>"
<< "<di_ddipcsVal species=\"Species_3\">0.3</di_ddipcsVal>"
<< "</di_densDepInfPropCondSusceptible>"
<< "<di_densDepInfStartYear>3</di_densDepInfStartYear>"
<< "</DensDepInfestation1>";
oOut << "<ConstRadialGrowth2>"
<< "<gr_adultConstRadialInc>"
<< "<gr_acriVal species=\"Species_1\">6</gr_acriVal>"
<< "<gr_acriVal species=\"Species_2\">10</gr_acriVal>"
<< "<gr_acriVal species=\"Species_3\">15</gr_acriVal>"
<< "</gr_adultConstRadialInc>"
<< "</ConstRadialGrowth2>";
oOut << "</paramFile>";
oOut.close();
return cFileString;
}
/////////////////////////////////////////////////////////////////////////////
// WriteDensDepInfestationXMLFile2()
/////////////////////////////////////////////////////////////////////////////
const char* WriteDensDepInfestationXMLFile2()
{
using namespace std;
const char *cFileString = "TestFile1.xml";
//Open file to write to
std::fstream oOut;
oOut.open( cFileString, ios::out | ios::trunc );
WriteDensDepNormalProcessingCommonStuff(oOut);
oOut << "<behaviorList>"
<< "<behavior>"
<< "<behaviorName>DensDepInfestation</behaviorName>"
<< "<version>1</version>"
<< "<listPosition>1</listPosition>"
<< "<applyTo species=\"Species_2\" type=\"Adult\"/>"
<< "<applyTo species=\"Species_3\" type=\"Adult\"/>"
<< "<applyTo species=\"Species_2\" type=\"Sapling\"/>"
<< "<applyTo species=\"Species_3\" type=\"Sapling\"/>"
<< "</behavior>"
<< "<behavior>"
<< "<behaviorName>StochasticMortality</behaviorName>"
<< "<version>1</version>"
<< "<listPosition>2</listPosition>"
<< "<applyTo species=\"Species_1\" type=\"Adult\"/>"
<< "<applyTo species=\"Species_2\" type=\"Adult\"/>"
<< "<applyTo species=\"Species_3\" type=\"Adult\"/>"
<< "<applyTo species=\"Species_1\" type=\"Sapling\"/>"
<< "<applyTo species=\"Species_2\" type=\"Sapling\"/>"
<< "<applyTo species=\"Species_3\" type=\"Sapling\"/>"
<< "<applyTo species=\"Species_1\" type=\"Seedling\"/>"
<< "<applyTo species=\"Species_2\" type=\"Seedling\"/>"
<< "<applyTo species=\"Species_3\" type=\"Seedling\"/>"
<< "</behavior>"
<< "<behavior>"
<< "<behaviorName>RemoveDead</behaviorName>"
<< "<version>1</version>"
<< "<listPosition>3</listPosition>"
<< "<applyTo species=\"Species_1\" type=\"Adult\"/>"
<< "<applyTo species=\"Species_2\" type=\"Adult\"/>"
<< "<applyTo species=\"Species_3\" type=\"Adult\"/>"
<< "<applyTo species=\"Species_1\" type=\"Sapling\"/>"
<< "<applyTo species=\"Species_2\" type=\"Sapling\"/>"
<< "<applyTo species=\"Species_3\" type=\"Sapling\"/>"
<< "<applyTo species=\"Species_1\" type=\"Seedling\"/>"
<< "<applyTo species=\"Species_2\" type=\"Seedling\"/>"
<< "<applyTo species=\"Species_3\" type=\"Seedling\"/>"
<< "</behavior>"
<< "</behaviorList>";
oOut << "<DensDepInfestation1>"
<< "<di_densDepInfMaxInfestation>1</di_densDepInfMaxInfestation>"
<< "<di_densDepInfA>0.2</di_densDepInfA>"
<< "<di_densDepInfBx>0.8</di_densDepInfBx>"
<< "<di_densDepInfBy>0.2</di_densDepInfBy>"
<< "<di_densDepInfMinDBH>"
<< "<di_ddimdVal species=\"Species_2\">5</di_ddimdVal>"
<< "<di_ddimdVal species=\"Species_3\">5</di_ddimdVal>"
<< "</di_densDepInfMinDBH>"
<< "<di_densDepInfCohortDBH>"
<< "<di_ddicdVal species=\"Species_2\">10</di_ddicdVal>"
<< "<di_ddicdVal species=\"Species_3\">15</di_ddicdVal>"
<< "</di_densDepInfCohortDBH>"
<< "<di_densDepInfPropResistant>"
<< "<di_ddiprVal species=\"Species_2\">0</di_ddiprVal>"
<< "<di_ddiprVal species=\"Species_3\">0</di_ddiprVal>"
<< "</di_densDepInfPropResistant>"
<< "<di_densDepInfPropCondSusceptible>"
<< "<di_ddipcsVal species=\"Species_2\">0.2</di_ddipcsVal>"
<< "<di_ddipcsVal species=\"Species_3\">0.3</di_ddipcsVal>"
<< "</di_densDepInfPropCondSusceptible>"
<< "<di_densDepInfStartYear>1</di_densDepInfStartYear>"
<< "</DensDepInfestation1>";
oOut << "<StochasticMortality2>"
<< "<mo_stochasticMortRate>"
<< "<mo_smrVal species=\"Species_1\">1.0</mo_smrVal>"
<< "<mo_smrVal species=\"Species_2\">0</mo_smrVal>"
<< "<mo_smrVal species=\"Species_3\">0</mo_smrVal >"
<< "</mo_stochasticMortRate>"
<< "</StochasticMortality2>";
oOut << "</paramFile>";
oOut.close();
return cFileString;
}
/////////////////////////////////////////////////////////////////////////////
// WriteDensDepInfestationXMLFile3()
/////////////////////////////////////////////////////////////////////////////
const char* WriteDensDepInfestationXMLFile3()
{
using namespace std;
const char *cFileString = "TestFile1.xml";
//Open file to write to
std::fstream oOut;
oOut.open( cFileString, ios::out | ios::trunc );
oOut << "<?xml version=\"1.0\" encoding=\"UTF-8\" standalone=\"no\" ?>"
<< "<paramFile fileCode=\"06010101\">"
<< "<plot>"
<< "<timesteps>30</timesteps>"
<< "<yearsPerTimestep>1</yearsPerTimestep>";
oOut << "<randomSeed>1</randomSeed>"
<< "<plot_lenX>100</plot_lenX>"
<< "<plot_lenY>100</plot_lenY>"
<< "<plot_precip_mm_yr>1150.64</plot_precip_mm_yr>"
<< "<plot_temp_C>12.88</plot_temp_C>"
<< "<plot_latitude>55.37</plot_latitude>"
<< "</plot>"
<< "<trees>"
<< "<tr_speciesList>"
<< "<tr_species speciesName=\"Species_1\"/>"
<< "<tr_species speciesName=\"Species_2\"/>"
<< "</tr_speciesList>"
<< "<tr_seedDiam10Cm>0.1</tr_seedDiam10Cm>"
<< "<tr_minAdultDBH>"
<< "<tr_madVal species=\"Species_1\">10</tr_madVal>"
<< "<tr_madVal species=\"Species_2\">10</tr_madVal>"
<< "</tr_minAdultDBH>"
<< "<tr_maxSeedlingHeight>"
<< "<tr_mshVal species=\"Species_1\">1.35</tr_mshVal>"
<< "<tr_mshVal species=\"Species_2\">1.35</tr_mshVal>"
<< "</tr_maxSeedlingHeight>"
<< "<tr_treemap>"
<< "<tm_treeSettings sp=\"Species_1\" tp=\"3\">"
<< "<tm_floatCodes>"
<< "<tm_floatCode label=\"X\">0</tm_floatCode>"
<< "<tm_floatCode label=\"Y\">1</tm_floatCode>"
<< "<tm_floatCode label=\"DBH\">2</tm_floatCode>"
<< "</tm_floatCodes>"
<< "</tm_treeSettings>"
<< "<tm_treeSettings sp=\"Species_2\" tp=\"3\">"
<< "<tm_floatCodes>"
<< "<tm_floatCode label=\"X\">0</tm_floatCode>"
<< "<tm_floatCode label=\"Y\">1</tm_floatCode>"
<< "<tm_floatCode label=\"DBH\">2</tm_floatCode>"
<< "</tm_floatCodes>"
<< "</tm_treeSettings>";
for (int i = 0; i < 1000; i++) {
oOut << "<tree sp=\"0\" tp=\"3\">"
<< "<fl c=\"0\">" << clModelMath::GetRand() * 99 << "</fl>" //X
<< "<fl c=\"1\">" << clModelMath::GetRand() * 99 << "</fl>" //Y
<< "<fl c=\"2\">20</fl>" //DBH
<< "</tree>";
}
for (int i = 0; i < 1000; i++) {
oOut << "<tree sp=\"1\" tp=\"3\">"
<< "<fl c=\"0\">" << clModelMath::GetRand() * 99 << "</fl>" //X
<< "<fl c=\"1\">" << clModelMath::GetRand() * 99 << "</fl>" //Y
<< "<fl c=\"2\">15</fl>" //DBH
<< "</tree>";
}
oOut << "</tr_treemap>"
<< "</trees>"
<< "<allometry>"
<< "<tr_adultLinearSlope>"
<< "<tr_alsVal species=\"Species_1\">1</tr_alsVal>"
<< "<tr_alsVal species=\"Species_2\">1</tr_alsVal>"
<< "</tr_adultLinearSlope>"
<< "<tr_adultLinearIntercept>"
<< "<tr_aliVal species=\"Species_1\">0</tr_aliVal>"
<< "<tr_aliVal species=\"Species_2\">0</tr_aliVal>"
<< "</tr_adultLinearIntercept>"
<< "<tr_saplingLinearSlope>"
<< "<tr_salsVal species=\"Species_1\">1</tr_salsVal>"
<< "<tr_salsVal species=\"Species_2\">1</tr_salsVal>"
<< "</tr_saplingLinearSlope>"
<< "<tr_saplingLinearIntercept>"
<< "<tr_saliVal species=\"Species_1\">0</tr_saliVal>"
<< "<tr_saliVal species=\"Species_2\">0</tr_saliVal>"
<< "</tr_saplingLinearIntercept>"
<< "<tr_seedlingLinearSlope>"
<< "<tr_selsVal species=\"Species_1\">1</tr_selsVal>"
<< "<tr_selsVal species=\"Species_2\">1</tr_selsVal>"
<< "</tr_seedlingLinearSlope>"
<< "<tr_seedlingLinearIntercept>"
<< "<tr_seliVal species=\"Species_1\">0</tr_seliVal>"
<< "<tr_seliVal species=\"Species_2\">0</tr_seliVal>"
<< "</tr_seedlingLinearIntercept>"
<< "<tr_canopyHeight>"
<< "<tr_chVal species=\"Species_1\">39.48</tr_chVal>"
<< "<tr_chVal species=\"Species_2\">39.48</tr_chVal>"
<< "</tr_canopyHeight>"
<< "<tr_stdAsympCrownRad>"
<< "<tr_sacrVal species=\"Species_1\">0.0549</tr_sacrVal>"
<< "<tr_sacrVal species=\"Species_2\">0.0549</tr_sacrVal>"
<< "</tr_stdAsympCrownRad>"
<< "<tr_stdCrownRadExp>"
<< "<tr_screVal species=\"Species_1\">1.0</tr_screVal>"
<< "<tr_screVal species=\"Species_2\">1.0</tr_screVal>"
<< "</tr_stdCrownRadExp>"
<< "<tr_conversionDiam10ToDBH>"
<< "<tr_cdtdVal species=\"Species_1\">1</tr_cdtdVal>"
<< "<tr_cdtdVal species=\"Species_2\">1</tr_cdtdVal>"
<< "</tr_conversionDiam10ToDBH>"
<< "<tr_interceptDiam10ToDBH>"
<< "<tr_idtdVal species=\"Species_1\">0</tr_idtdVal>"
<< "<tr_idtdVal species=\"Species_2\">0</tr_idtdVal>"
<< "</tr_interceptDiam10ToDBH>"
<< "<tr_interceptDiam10ToDBH>"
<< "<tr_idtdVal species=\"Species_1\">0</tr_idtdVal>"
<< "<tr_idtdVal species=\"Species_2\">0</tr_idtdVal>"
<< "</tr_interceptDiam10ToDBH>"
<< "<tr_stdAsympCrownHt>"
<< "<tr_sachVal species=\"Species_1\">0.389</tr_sachVal>"
<< "<tr_sachVal species=\"Species_2\">0.389</tr_sachVal>"
<< "</tr_stdAsympCrownHt>"
<< "<tr_stdCrownHtExp>"
<< "<tr_scheVal species=\"Species_1\">1.0</tr_scheVal>"
<< "<tr_scheVal species=\"Species_2\">1.0</tr_scheVal>"
<< "</tr_stdCrownHtExp>"