All pull requests

Pull requests

• Add Trana sample sheet

  #5355·diitaz93 opened Oct 6, 2026Contributor·15 tasks·

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• Create Trana params file

  #5352·mogmi opened Oct 6, 2026Contributor·15 tasks·

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• Make parent and internal_id searchable in the case sample table

  #5345·RasmusBurge-CG opened Oct 2, 2026Contributor·15 tasks·

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• Reduce log spam in demux-all service

  #5344·kedhammar opened Oct 2, 2026Contributor·1 of 15 tasks·

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• Upload CRAM instead of BAM alignment files for Nallo

  #5342·diitaz93 opened Sep 30, 2026Contributor·15 tasks·

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• DEV - Raredisease 4

  #5341·diitaz93 opened Sep 30, 2026Contributor·2 of 7 tasks·

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• Read Housekeeper mount path from DDN config

  #5338·islean opened Sep 29, 2026Member·15 tasks·

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  8

• Add backticks to event name and identifiers in slack messages

  #5334·mogmi opened Sep 28, 2026Contributor·

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• Admin view - dark theme

  #5324·RasmusBurge-CG opened Sep 19, 2026Contributor·15 tasks·

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• fix: support configured nextflow directories

  #5298·ahdamin opened Sep 1, 2026Contributor·

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• Remove outdated information

  #5218·Vince-janv opened Jul 24, 2026Member·

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  11

• Update to Nallo 1.0.0

  #5210·fellen31 opened Jul 17, 2026Contributor·15 tasks·

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• fix: add session retries to DDN dataflow client

  #5183·ahdamin opened Jul 7, 2026Contributor·

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• Patch race condition in demultiplexing

  #5106·RasmusBurge-CG opened May 26, 2026Contributor·15 tasks·

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• Refactor most "cg store" commands to be called "cg prepare"

  #5059·mogmi opened Apr 27, 2026Contributor·

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• Keep a changelog

  #5038·dnil opened Apr 18, 2026Member·15 tasks·

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• Case created at non nullable

  #5037·mogmi opened Apr 17, 2026Contributor·1 of 3 tasks·

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• Two CG CI workflows exist. Pick the current pytest used with deploys to the default branch

  #5036·dnil opened Apr 17, 2026Member·15 tasks·

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• Increase the fallback for microSALT version command

  #4974·RasmusBurge-CG opened Mar 24, 2026Contributor·15 tasks·

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• Patch post processing error raising

  #4849·islean opened Jan 22, 2026Member·15 tasks·

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• Switch from abstract classes to protocols with generic types

  #4797·mogmi opened Dec 22, 2025Contributor·15 tasks·

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• Create analysis in Trailblazer first for raw-data

  #4793·mogmi opened Dec 19, 2025Contributor·15 tasks·

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• remove workflow_bin_path for taxprofiler

  #4787·RasmusBurge-CG opened Dec 17, 2025Contributor·1 of 15 tasks·

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• Remove workflow_bin_path

  #4786·RasmusBurge-CG opened Dec 16, 2025Contributor·15 tasks·

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• update variant catalog path in raredisease bundle

  #4781·ramprasadn opened Dec 16, 2025Contributor·15 tasks·

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