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Remove dead scripts and fix stale doc paths - #352
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Deletes code with no live caller:
- workflow/scripts/run_2pcf_highres.py and the parked, unrunnable
xi_highres block in workflow/rules/twopoint.smk that was its only
reference; the mpi4py comment in pyproject.toml no longer names it.
- papers/bmodes/scripts/run_cov_sweep.sh, which calls
workflow/scripts/run_cosmocov_chain.sh, absent from develop.
Fixes docs that point at paths or tools that do not exist:
- CLAUDE.md, CONTRIBUTING.md: single-test example uses test_cosmo_val.py.
- CLAUDE.md: cosmo_inference runs through Snakemake (inference_fiducial),
not a pipeline.sh driver.
- papers/{bmodes,cosmo_val}/Snakefile: read cat_config through code/
rather than the deprecated pure_eb symlink.
- ecut_spec.md, update_survey_stats.py: paths under papers/bmodes/.
- README badge and installation docs: Python 3.12 floor, matching
requires-python.
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01HeMhD6yCyrgBz5oz87bCtR
cailmdaley
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Sep 25, 2026
…val-sacc Brings in #351 (b_modes arrays API + get_theo_xi unpack) and #352 (dead scripts, doc paths). b_modes.py and test_b_modes.py resolve to develop's side, which is this branch's version plus the unpack fix and its test. Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_01HeMhD6yCyrgBz5oz87bCtR
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Deletes dead code and fixes docs that are wrong on
develop. This is the non-SACC cleanup from #251, split out so #251's diff shrinks once this merges.workflow/scripts/run_2pcf_highres.py, plus the commented-outxi_highresblock intwopoint.smkthat was its only reference. Alsopapers/bmodes/scripts/run_cov_sweep.sh, which calls arun_cosmocov_chain.shthat no longer exists.test_cosmo_val.py.inference_fiducialcall instead of apipeline.shthat doesn't exist.ecut_spec.mdandupdate_survey_stats.pypoint to paths underpapers/bmodes/.requires-python.cat_config.yamlviacode/instead of the deprecatedpure_ebsymlink (same file).Dry-runs of the bmodes and cosmo_val workflows plan the same jobs as on
develop.— Claude (Opus) on behalf of Cail.
🤖 Generated with Claude Code
https://claude.ai/code/session_01HeMhD6yCyrgBz5oz87bCtR