Issues

• Link expired

  ImmuneDynamics/Spectre#212 · Filter by author OnikoLiani opened on Nov 5, 2025

• The size argument of element_rect() is deprecated as of ggplot2 3.4.0.

  ImmuneDynamics/Spectre#211 · Filter by author sxa190065 opened on Oct 21, 2025

• Revisit some packages in suggest

  troubleshooting
  ImmuneDynamics/Spectre#209 · Filter by author ghar1821 opened on Sep 16, 2025

• Link expired

  ImmuneDynamics/Spectre#206 · Filter by author betgou opened on May 1, 2025
  7

  

• Cytonorm doesn't work when specifying different cellular and clustering parameters

  ImmuneDynamics/Spectre#204 · Filter by author hrj21 opened on Feb 18, 2025
  2

• Trouble Accessing Spectre Workflow Guides

  ImmuneDynamics/Spectre#201 · Filter by author nolanvale opened on Oct 30, 2024
  1

• Error processing large IMC dataset in advanced analysis - 1. Add Masks

  ImmuneDynamics/Spectre#198 · Filter by author RoryCostell opened on Oct 1, 2024
  3

• Unbiased Marker Selection for Clusters

  enhancement
  ImmuneDynamics/Spectre#196 · Filter by author Palomapvb opened on Sep 3, 2024
  3

• Area analysis on Data.table not working in Spectre 1.2.0

  ImmuneDynamics/Spectre#195 · Filter by author RoryCostell opened on Aug 30, 2024
  2

• Advice for automated cell classification workflow between datasets with different number of parameters

  ImmuneDynamics/Spectre#188 · Filter by author denvercal1234GitHub opened on Apr 26, 2024
  11

• How to identify/visualize co-expression (correlation) between markers?

  ImmuneDynamics/Spectre#182 · Filter by author WilliamMWei opened on Dec 20, 2023
  5

• No appropriate meta clustring with run.flowsom

  ImmuneDynamics/Spectre#154 · Filter by author Tenrolf opened on Apr 5, 2023
  3

  

• Create a function argument to dictate the order in multi plots

  enhancement
  ImmuneDynamics/Spectre#151 · Filter by author tomashhurst opened on Feb 17, 2023
  

• Error in multicut_2_segment

  ImmuneDynamics/Spectre#126 · Filter by author adriadalmau opened on Apr 7, 2022

• write.hdf5: plot merged channel stored in AR?

  ImmuneDynamics/Spectre#120 · Filter by author mabar1 opened on Dec 27, 2021
  1

  

• Review the NA vs 0 metrics

  enhancement
  ImmuneDynamics/Spectre#118 · Filter by author tomashhurst opened on Nov 5, 2021
  

• Region analysis with 'NA's

  bug
  ImmuneDynamics/Spectre#117 · Filter by author tomashhurst opened on Nov 5, 2021
  

• area analysis on DATA.TABLE

  bug
  ImmuneDynamics/Spectre#111 · Filter by author Mark-Ste opened on Sep 20, 2021
  1