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Update BVBRC_stats.Rmd - #54

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AbhirupaGhosh wants to merge 7 commits into
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The bacteria list includes a reasonable number of isolates with AMR phenotypes.

  1. Aliarcobacter butzleri
  2. Proteus mirabilis
  3. Staphylococcus capitis
  4. Staphylococcus epidermidis
  5. Acinetobacter pittii
  6. Burkholderia cepacia
  7. Helicobacter pylori
  8. Campylobacter jejuni
  9. Streptococcus uberis
  10. Pasteurella multocida
  11. Vibrio cholerae
  12. Enterococcus faecalis
  13. Haemophilus influenzae
  14. Corynebacterium striatum
  15. Klebsiella aerogenes
  16. Citrobacter freundii
  17. Listeria monocytogenes
  18. Klebsiella quasipneumoniae
  19. Streptococcus agalactiae
  20. Klebsiella oxytoca
  21. Klebsiella variicola
  22. Corynebacterium diphtheriae
  23. Serratia marcescens
  24. Neisseria meningitidis
  25. Shigella flexneri
  26. Campylobacter coli
  27. Clostridioides difficile

The bacteria list with reasonable number of isolates with AMR phenotypes.
Comment thread vignettes/BVBRC_stats.Rmd Outdated
AbhirupaGhosh and others added 3 commits September 15, 2026 15:16
Co-authored-by: Emily Boyer <130874527+eboyer221@users.noreply.github.com>
@AbhirupaGhosh
AbhirupaGhosh requested a review from amcim September 16, 2026 01:14
Comment thread vignettes/BVBRC_stats.Rmd Outdated
Comment thread vignettes/BVBRC_stats.Rmd
AbhirupaGhosh and others added 3 commits September 16, 2026 10:40
Co-authored-by: Emily Boyer <130874527+eboyer221@users.noreply.github.com>
Co-authored-by: Emily Boyer <130874527+eboyer221@users.noreply.github.com>
Co-authored-by: Emily Boyer <130874527+eboyer221@users.noreply.github.com>
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