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fix(codex): rebuild index when source snapshot is unavailable - #123
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CodeGraph worktree setup aborts when SQLite cannot read-only back up the primary WAL database, including macOS databases without WAL/SHM sidecars. Handle failure locally around both optional backup commands, preserve SQLite stderr, and let the existing init path rebuild an independent local index. Other setup failures still propagate.
Generated setup regressions cover both cache-lock branches, successful snapshots, partial-file cleanup, lock ownership, preserved caches, safety refusals, unindexed projects, and init/sync/normalization exit codes. Migration ownership hashes and custom configuration protection remain unchanged.
Validation:
cargo fmt --checkcargo clippy --locked --all-targets --all-features -- -D warningscargo test --locked: 212 unit tests and 42 CLI integration tests passed, including 7 new setup tests; pre-commit repeated the full suite successfully.node --test apps/jt/src/codex/dependencies.test.mjs: 9 passed.