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fix: key MSA overlap on accession, not on the residue string AlphaPulldown-CI-CD #1706: Commit 5e2da98 pushed by DimaMolod
26m 8s main
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26m 8s
fix: keep AF2 chain IDs at A, B, C under padding and out-of-order asy… AlphaPulldown-CI-CD #1705: Commit 7a9b665 pushed by DimaMolod
21m 34s main
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21m 34s
fix: keep AF2 chain IDs at A, B, C under padding and out-of-order asym_id AlphaPulldown-CI-CD #1704: Pull request #641 opened by DimaMolod
13m 11s fix/af2-chain-index-padding-and-order
fix/af2-chain-index-padding-and-order
13m 11s
chore: drop the scratch files a stray "git add ." swept into the repo AlphaPulldown-CI-CD #1703: Commit 1538e95 pushed by DimaMolod
21m 45s main
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21m 45s
feat: compare MSA backends by overlap and Neff, not by counting AlphaPulldown-CI-CD #1702: Commit 264d60b pushed by DimaMolod
19m 16s main
main
19m 16s
docs: put the MMseqs2 section under a cut, and stop calling a ratio "… AlphaPulldown-CI-CD #1701: Commit 2bf9a8d pushed by DimaMolod
21m 53s main
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21m 53s
AlphaPulldown v2.8.0 AlphaPulldown-CI-CD #1700: Release 2.8.0 published by DimaMolod
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chore: release 2.8.0 AlphaPulldown-CI-CD #1699: Commit 284407b pushed by DimaMolod
25m 11s main
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25m 11s
fix: say so when MMseqs2 crashes instead of reporting nothing AlphaPulldown-CI-CD #1698: Commit 8c22c33 pushed by DimaMolod
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feat: search RNA chains through the local MMseqs2 path (#639) AlphaPulldown-CI-CD #1697: Commit bed01e2 pushed by DimaMolod
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20m 59s
feat: optional Foldseek + ESMFold structural template search AlphaPulldown-CI-CD #1696: Pull request #638 synchronize by DimaMolod
12m 10s feat/foldseek-esmfold-templates
feat/foldseek-esmfold-templates
12m 10s
feat: search RNA chains through the local MMseqs2 path AlphaPulldown-CI-CD #1695: Pull request #639 synchronize by DimaMolod
12m 26s feat/mmseqs2-rna-msas
feat/mmseqs2-rna-msas
12m 26s
fix: per-fold model flags, and an AF3 pipeline seam that is not a glo… AlphaPulldown-CI-CD #1694: Commit 2a99ad0 pushed by DimaMolod
21m 11s main
main
21m 11s
fix: per-fold model flags, and an AF3 pipeline seam that is not a global AlphaPulldown-CI-CD #1693: Pull request #640 opened by DimaMolod
12m 12s fix/per-fold-flags-and-af3-pipeline-seam
fix/per-fold-flags-and-af3-pipeline-seam
12m 12s
feat: search RNA chains through the local MMseqs2 path AlphaPulldown-CI-CD #1692: Pull request #639 synchronize by DimaMolod
12m 3s feat/mmseqs2-rna-msas
feat/mmseqs2-rna-msas
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test: guard the MSA stage against importing AlphaFold or JAX AlphaPulldown-CI-CD #1691: Commit 7ec4539 pushed by DimaMolod
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fix: delete a dead duplicate adapter and finish the flag consolidation AlphaPulldown-CI-CD #1690: Commit a4f3500 pushed by DimaMolod
20m 11s main
main
20m 11s
feat: search RNA chains through the local MMseqs2 path AlphaPulldown-CI-CD #1689: Pull request #639 synchronize by DimaMolod
12m 25s feat/mmseqs2-rna-msas
feat/mmseqs2-rna-msas
12m 25s
feat: search RNA chains through the local MMseqs2 path AlphaPulldown-CI-CD #1688: Pull request #639 opened by DimaMolod
12m 53s feat/mmseqs2-rna-msas
feat/mmseqs2-rna-msas
12m 53s
feat: optional Foldseek + ESMFold structural template search AlphaPulldown-CI-CD #1687: Pull request #638 synchronize by DimaMolod
11m 28s feat/foldseek-esmfold-templates
feat/foldseek-esmfold-templates
11m 28s
feat: optional Foldseek + ESMFold structural template search AlphaPulldown-CI-CD #1686: Pull request #638 opened by DimaMolod
12m 49s feat/foldseek-esmfold-templates
feat/foldseek-esmfold-templates
12m 49s
docs: drop performance claims and a stale duplicated section AlphaPulldown-CI-CD #1685: Commit 18267ba pushed by DimaMolod
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docs: record the measured AF3 batching gain AlphaPulldown-CI-CD #1684: Commit 9a5a799 pushed by DimaMolod
20m 49s main
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20m 49s
fix: make the database setup script runnable without a checkout AlphaPulldown-CI-CD #1683: Commit 1ae1e4c pushed by DimaMolod
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docs: document the database setup script AlphaPulldown-CI-CD #1682: Commit efb5ca9 pushed by DimaMolod
21m 41s main
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21m 41s