Manchester Bioinference Group

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1. Scasat Scasat Public

   Scasat is a single cell ATAC-seq preprocessing and analysis pipeline

   Jupyter Notebook 35 6

2. BranchedGP BranchedGP Public

   Branching Gaussian process

   Jupyter Notebook 30 8

3. IntegratingATAC-RNA-HiC IntegratingATAC-RNA-HiC Public

   scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper

   Jupyter Notebook 26 2

4. GPcounts GPcounts Public

   Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods

   Jupyter Notebook 25 3

5. GrandPrix GrandPrix Public

   GrandPrix

   Jupyter Notebook 17 4

6. DEtime DEtime Public

   R package for two-sample time series analysis using Gaussian process methods

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