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@MetabolicAtlas

Metabolic Atlas

Metabolic Atlas is a project at the National Bioinformatics Infrastructure Sweden, under the scientific direction of Prof. Jens Nielsen at Chalmers University.

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  1. MetabolicAtlas MetabolicAtlas Public

    Open source genome-scale metabolic models of human and model animals

    Vue 27 5

  2. standard-GEM standard-GEM Public template

    The standard for open-source GEMs on GitHub

    Python 22 5

  3. 3d-network-viewer 3d-network-viewer Public

    The 3D component of the Map Viewer for MetabolicAtlas.org

    JavaScript 3 3

  4. data-generation data-generation Public

    Process the raw data-files for ingestion into the Neo4j database

    JavaScript

  5. data-files data-files Public

    Source data files used when deploying Metabolic Atlas

    Jupyter Notebook

  6. standard-GEM-validation standard-GEM-validation Public

    Validate standard-GEM repositories

    Python 3

Repositories

Showing 10 of 11 repositories
  • standard-GEM-validation Public

    Validate standard-GEM repositories

    MetabolicAtlas/standard-GEM-validation's past year of commit activity
    Python 3 GPL-3.0 0 7 0 Updated Sep 24, 2026
  • standard-GEM Public template

    The standard for open-source GEMs on GitHub

    MetabolicAtlas/standard-GEM's past year of commit activity
    Python 22 CC-BY-4.0 5 9 0 Updated Sep 23, 2026
  • MetabolicAtlas Public

    Open source genome-scale metabolic models of human and model animals

    MetabolicAtlas/MetabolicAtlas's past year of commit activity
    Vue 27 GPL-3.0 5 103 16 Updated May 5, 2026
  • biohackathon23 Public
    MetabolicAtlas/biohackathon23's past year of commit activity
    JavaScript 2 CC-BY-4.0 0 3 0 Updated Apr 10, 2026
  • memote-docker Public Forked from opencobra/memote-docker

    Use MEMOTE with Docker

    MetabolicAtlas/memote-docker's past year of commit activity
    Dockerfile 0 Apache-2.0 2 0 0 Updated Jan 4, 2026
  • data-generation Public

    Process the raw data-files for ingestion into the Neo4j database

    MetabolicAtlas/data-generation's past year of commit activity
    JavaScript 0 MIT 0 2 1 Updated Nov 15, 2025
  • data-files Public

    Source data files used when deploying Metabolic Atlas

    MetabolicAtlas/data-files's past year of commit activity
    Jupyter Notebook 0 0 2 0 Updated Jul 4, 2025
  • action-yamllint Public Forked from ibiqlik/action-yamllint

    GitHub Action - Yaml Lint

    MetabolicAtlas/action-yamllint's past year of commit activity
    Shell 0 MIT 46 0 0 Updated Oct 6, 2023
  • 3d-network-viewer Public

    The 3D component of the Map Viewer for MetabolicAtlas.org

    MetabolicAtlas/3d-network-viewer's past year of commit activity
    JavaScript 3 GPL-3.0 3 0 1 Updated Jul 19, 2023
  • escher Public Forked from zakandrewking/escher

    Build, share, and embed visualizations of metabolic pathways.

    MetabolicAtlas/escher's past year of commit activity
    JavaScript 0 81 0 0 Updated Jan 25, 2023
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