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Optimization ideas for mxpedigree #159
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smasongarrison
opened on Jul 11, 2026
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- Consolidate/reuse relatedness matrices when they are the same for multiple families. right now each group gets its own copy which is hugely expensive.
- you can reuse matrices if they have the same IDs, so we would need to overhaul a couple of things in the code so that the ids can be made more generic and then remapped.
- See https://github.com/R-Computing-Lab/BGmisc/blob/temporal/data-raw/test_static_family_grouping.R
- reduce how much information is storred for the temporal matrices. Do we really need each of the following?
| Object | Retain? | Reason |
|---|---|---|
| Eta_k | Usually no | Reconstructible linear predictor |
| L_k | Yes | Small and directly interpretable |
| K_k | Usually no | Reconstructible from L_k |
| V_k | Yes | Actual component covariance |
| V | Yes | Required by expectation |
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