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new atime ci, no more old cml container #7901

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411b562
new atime ci, no more old cml container
tdhock Sep 18, 2026
b2f0d9d
run ci if yml config modified
tdhock Sep 18, 2026
3142777
rm workflow_dispatch which did not work anyway
tdhock Sep 18, 2026
e9abfaa
rm @main
tdhock Sep 18, 2026
feb22a3
Compile without -Werror=format-security
aitap Sep 18, 2026
e1fa82b
Allow manual dispatch
aitap Sep 18, 2026
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132 changes: 125 additions & 7 deletions .github/workflows/performance-tests.yml
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Original file line number Diff line number Diff line change
@@ -1,6 +1,7 @@
name: atime performance tests

on:
workflow_dispatch:
pull_request:
types:
- opened
Expand All @@ -10,15 +11,132 @@ on:
- 'R/**'
- 'src/**'
- '.ci/atime/**'
workflow_dispatch:
- '.github/workflows/performance-tests.yml'

jobs:
comment:
if: github.repository == 'Rdatatable/data.table'
runs-on: ubuntu-latest
container: ghcr.io/iterative/cml:0-dvc2-base1
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
repo_token: ${{ secrets.GITHUB_TOKEN }}
steps:
- uses: Anirban166/Autocomment-atime-results@v1.4.3

@MichaelChirico MichaelChirico Sep 18, 2026

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IIUC this is designed to supplant the old action which can't be updated? Is there anything stopping us from forking it instead (or, if the current PR is intended as such a fork, could we at least host it in a dedicated repo under Rdatatable or maybe under your tdhock?)

- name: Start timer
run: echo "START_SETUP_TIME=$(date +%s)" >> $GITHUB_ENV
shell: bash
- name: Checkout
uses: actions/checkout@v6
with:
fetch-depth: 0
- name: Retrieve branch references, necessary for perf testing past versions
shell: bash
run: |
git switch "${GITHUB_BASE_REF}"
git switch "${GITHUB_HEAD_REF}"
- uses: actions/setup-node@v6
name: setup-node https://github.com/actions/setup-node?tab=readme-ov-file#usage
- name: Safe directory exception
run: |
git config --global --add safe.directory '*'
shell: bash
- name: Setup
uses: eddelbuettel/github-actions/r-ci@master
- name: Dependencies
run: ./run.sh install_all
- name: Adjust compilation flags for old data.table versions
run: sudo sed -i 's|-Werror=format-security||' `Rscript -e 'writeLines(R.home("etc"))'`/Makeconf
- name: Install and run atime
run: |
echo "options(repos = c(CRAN = 'https://cloud.r-project.org'))" >> .Rprofile
Rscript -e 'install.packages(c("atime", "ggplot2", "directlabels"))'
echo "END_SETUP_START_TESTS_TIME=$(date +%s)" >> $GITHUB_ENV
Rscript -e 'atime::atime_pkg(Sys.getenv("GITHUB_WORKSPACE"), tests.dir = ".ci");'
echo "END_TESTS_TIME=$(date +%s)" >> $GITHUB_ENV
shell: bash
- name: Upload artifact
id: artifact-upload-step
uses: actions/upload-artifact@v4
with:
name: atime-results
path: .ci/atime/
- name: comments.json
if: ${{ github.event_name == 'pull_request' }}
env:
PR_NUMBER: ${{ github.event.number }}
TAG: atime
shell: bash
run: |
curl --no-progress-meter -L -H "Accept: application/vnd.github+json" -H "X-GitHub-Api-Version: 2026-03-10" https://api.github.com/repos/$GITHUB_REPOSITORY/issues/$PR_NUMBER/comments > comments.json
cat comments.json
echo > comment-number.txt
echo "<!-- automatic comment for $TAG -->" > comment.md
cat comment.md
- name: comment-number.txt
if: ${{ github.event_name == 'pull_request' }}
shell: node {0}
run: |
fs = require('fs');
tag = fs.readFileSync('comment.md', 'utf-8');
console.log(tag);
content = fs.readFileSync('comments.json', 'utf-8').replaceAll("\r", "");
console.log(content);
prc = JSON.parse(content);
flist = prc.filter((o) => { return o.body.startsWith(tag); });
console.log(flist);
if(flist.length == 0) process.exit(0);
comment_id = flist[0].id;
console.log(comment_id);
fs.writeFileSync('comment-number.txt', comment_id+"");
- name: add images
shell: bash
run: |
uploadImage() {
local png=$1
curl -F "file=@$png" -F "visibility=unlisted" https://picrd.com/api/upload | sed 's/.*image_url":"//' | sed 's/",".*//'
}
cat comment-number.txt
PREVIEW_URL=$(uploadImage .ci/atime/tests_preview_facet.png)
ALL_URL=$(uploadImage .ci/atime/tests_all_facet.png)
echo $PREVIEW_URL $ALL_URL
cat .ci/atime/HEAD_issues.md >> comment.md
echo -e "\n[![Comparison Plot]($PREVIEW_URL)]($ALL_URL)" >> comment.md
echo -e "\nGenerated via commit ${{ github.event.pull_request.head.sha }}" >> comment.md
echo -e "\nDownload link for the artifact containing the test results: [↓ atime-results.zip](${{ github.server_url }}/${{ github.repository }}/actions/runs/${{ github.run_id }}/artifacts/${{ steps.artifact-upload-step.outputs.artifact-id }})" >> comment.md
- name: add content to comment.md
run: |
R_SETUP_DURATION=$((END_SETUP_START_TESTS_TIME - START_SETUP_TIME))
VERSION_SETUP_DURATION=$(cut -d '.' -f 1 ./.ci/atime/install_seconds.txt)
ATIME_TESTS_DURATION=$((END_TESTS_TIME - END_SETUP_START_TESTS_TIME - VERSION_SETUP_DURATION))
formatTime() {
local totalSeconds=$1
if [ $totalSeconds -lt 0 ]; then
echo "Time calculation error: negative duration"
return
fi
if [ $totalSeconds -lt 60 ]; then
echo "${totalSeconds} seconds"
else
local minutes=$((totalSeconds / 60))
local seconds=$((totalSeconds % 60))
echo "${minutes} minutes and ${seconds} seconds"
fi
}
echo -e "\n| Task | Duration |" >> comment.md
echo -e "|---|---|" >> comment.md
echo -e "| R setup and installing dependencies | $(formatTime $R_SETUP_DURATION) |" >> comment.md
echo -e "| Installing different package versions | $(formatTime $VERSION_SETUP_DURATION) |" >> comment.md
echo -e "| Running and plotting the test cases | $(formatTime $ATIME_TESTS_DURATION) |" >> comment.md
- name: convert comment to json https://stackoverflow.com/questions/1251999/how-can-i-replace-each-newline-n-with-a-space-using-sed/1252191#1252191 then post
if: ${{ github.event_name == 'pull_request' }}
env:
PR_COMMENT_TOKEN: ${{ secrets.GITHUB_TOKEN }}
PR_NUMBER: ${{ github.event.number }}
shell: bash
run: |
ISSUES_API=https://api.github.com/repos/$GITHUB_REPOSITORY/issues
PR_API=$ISSUES_API/$PR_NUMBER/comments
VERSION=2026-03-10
ACCEPT=application/vnd.github+json
COMMENT_NUMBER=$(cat comment-number.txt)
if [ "$COMMENT_NUMBER" == "" ]; then CMD=$PR_API; else CMD=$ISSUES_API/comments/$COMMENT_NUMBER; fi; echo $CMD
cat comment.md
MD=$(sed 's/"/\\"/g' comment.md | sed ':a;N;$!ba;s/\n/\\n/g')
echo '{"body":"'$MD'"}' > pr-comment.json
cat pr-comment.json
curl --no-progress-meter -L -H "Accept: $ACCEPT" -H "X-GitHub-Api-Version: $VERSION" -X POST -H "Authorization: Bearer $PR_COMMENT_TOKEN" $CMD -d "@pr-comment.json"
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