Issues

• ASE UmbrellaIntegration

  SSAGESLabs/PySAGES#382 · Filter by author yanglinyuyu opened on Jun 26, 2026

• Incorrect bias application for NVT in jax-md backend

  SSAGESLabs/PySAGES#377 · Filter by author em819 opened on Apr 27, 2026

• Arithmetic operations on CVs

  SSAGESLabs/PySAGES#367 · Filter by author em819 opened on Oct 23, 2025
  2

• Access to neighborlist after JAX-MD backend finishes

  SSAGESLabs/PySAGES#353 · Filter by author em819 opened on Jun 5, 2025
  1

• FAQ page (wiki and documentation)

  SSAGESLabs/PySAGES#291 · Filter by author ricalessandri opened on Dec 14, 2023

• Barycenter Calculation in OpenMM

  SSAGESLabs/PySAGES#287 · Filter by author svarner9 opened on Oct 18, 2023
  3

• Shape of histograms in spectral-ABF method

  SSAGESLabs/PySAGES#284 · Filter by author xuyinan2 opened on Oct 5, 2023

• NaN after restarting simulation

  SSAGESLabs/PySAGES#279 · Filter by author RorroArt opened on Sep 6, 2023
  4

• MetaDLogger unable to store CV if CV is out of the grid

  SSAGESLabs/PySAGES#272 · Filter by author yzjin opened on Jul 20, 2023

• Making Metadynamics compatible with restart API

  SSAGESLabs/PySAGES#268 · Filter by author yzjin opened on Jun 11, 2023
  1

• Some analysis techniques

  SSAGESLabs/PySAGES#265 · Filter by author thangckt opened on Apr 20, 2023
  2

• Example using JAX-MD

  SSAGESLabs/PySAGES#262 · Filter by author Chenghao-Wu opened on Mar 23, 2023
  3

• Make analyze more flexible

  API
  SSAGESLabs/PySAGES#239 · Filter by author p-zubieta opened on Dec 16, 2022
  3

• Support for NPT simulations with jax_md

  backends
  SSAGESLabs/PySAGES#232 · Filter by author maggiezimon opened on Oct 27, 2022

• Pysages-ASE Nose-Hoover NVT error in forces

  backends
  SSAGESLabs/PySAGES#220 · Filter by author gustavor101 opened on Oct 7, 2022
  1

• External Fields support

  API
  SSAGESLabs/PySAGES#198 · Filter by author InnocentBug opened on Aug 16, 2022

• Support for neighborlists

  SSAGESLabs/PySAGES#197 · Filter by author sivadasetty opened on Aug 16, 2022

• Document how to implement new CV/methods

  SSAGESLabs/PySAGES#180 · Filter by author p-zubieta opened on Aug 1, 2022

• Switching from .dat file writing to pickling

  SSAGESLabs/PySAGES#172 · Filter by author ricalessandri opened on Jul 28, 2022
  8

  

• Add tests and README for #42

  SSAGESLabs/PySAGES#80 · Filter by author p-zubieta opened on Nov 3, 2021