Issues

• FASTQ outputs with lane splitting disabled should be recognized

  Bug

  ShawHahnLab/umbra#148 · Filter by author ressy opened on Apr 29, 2026 · Version 0.0.9

• Empty string should be rejected for project name

  enhancement
  ShawHahnLab/umbra#125 · Filter by author ressy opened on Nov 7, 2024 · Version 0.0.9

• Chunked Box uploader should be made fault-tolerant like the older uploader is

  enhancement
  ShawHahnLab/umbra#123 · Filter by author ressy opened on Oct 21, 2022 · Version 0.0.9

• Project name should implicitly fill as expected in experiment spreadsheets

  enhancement
  ShawHahnLab/umbra#122 · Filter by author ressy opened on Oct 20, 2022 · Version 0.0.9

• Box uploads should optionally set expiration on share links

  enhancement
  ShawHahnLab/umbra#116 · Filter by author ressy opened on Feb 16, 2021 · Version 0.1.0
  1

• Box auth setup should show access error for web server log

  enhancement
  ShawHahnLab/umbra#113 · Filter by author ressy opened on Jan 20, 2021 · Version 0.0.9

• Exceptions during alignment intake should trigger admin email

  enhancement
  ShawHahnLab/umbra#103 · Filter by author ressy opened on Sep 17, 2020 · Version 0.0.9
  1

• Failed alignments should be handled

  enhancement
  ShawHahnLab/umbra#91 · Filter by author ressy opened on Aug 20, 2020 · Version 0.1.0
  2

• Run failure should be available via Run class and the report

  enhancement
  ShawHahnLab/umbra#82 · Filter by author ressy opened on Aug 10, 2020 · Version 0.1.0

• We need a task to just copy raw FASTQ to the processing directory

  enhancementproc task
  ShawHahnLab/umbra#78 · Filter by author ressy opened on Aug 6, 2020 · Version 0.0.9

• Systemd service should support reload command

  enhancement
  ShawHahnLab/umbra#70 · Filter by author ressy opened on Apr 3, 2020 · Version 0.1.0

• Duplicate sample name case should be handled

  bug
  ShawHahnLab/umbra#50 · Filter by author ressy opened on May 7, 2019 · Version 0.1.0
  1