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Code for the image processing and analysis described our Nature Protocols paper.

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NatureProtocols_step1.txt
NatureProtocols_step1.txt
 
 
NatureProtocols_step2.txt
NatureProtocols_step2.txt
 
 
NatureProtocols_step3-1.txt
NatureProtocols_step3-1.txt
 
 
NatureProtocols_step3-2.txt
NatureProtocols_step3-2.txt
 
 
NatureProtocols_step4.txt
NatureProtocols_step4.txt
 
 
NatureProtocols_step5.txt
NatureProtocols_step5.txt
 
 
NatureProtocols_step6.txt
NatureProtocols_step6.txt
 
 
NatureProtocols_step7.txt
NatureProtocols_step7.txt
 
 
NatureProtocols_step8.txt
NatureProtocols_step8.txt
 
 
READ_ME.txt
READ_ME.txt
 
 
atlasAlignment.py
atlasAlignment.py
 
 
convertTiffFiles.py
convertTiffFiles.py
 
 
edgeDetection.py
edgeDetection.py
 
 
edge_detection_Prewitt.cpp
edge_detection_Prewitt.cpp
 
 
exportTiffStack.py
exportTiffStack.py
 
 
fileMerging.py
fileMerging.py
 
 
file_merging.cpp
file_merging.cpp
 
 
gpl-3.0.txt
gpl-3.0.txt
 
 
help.txt
help.txt
 
 
internalAlignment.py
internalAlignment.py
 
 
median_brainOnly.py
median_brainOnly.py
 
 
normalisation_comparison.py
normalisation_comparison.py
 
 
sameBrainAlignment.py
sameBrainAlignment.py
 
 

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Code for the image processing and analysis described our Nature Protocols paper.

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