Issues

• Plate Map Search Error in Cytosnake Workflow

  bug
  WayScience/CytoSnake#99 · Filter by author axiomcura opened on Jan 3, 2024

• CytoSnake crashes when using .parquet profiles.

  WayScience/CytoSnake#98 · Filter by author axiomcura opened on Dec 28, 2023

• CytoSummaryNet new aggregation module for CytoSnake

  NewModule
  WayScience/CytoSnake#97 · Filter by author axiomcura opened on Dec 19, 2023

• Add Unit testing documentation

  WayScience/CytoSnake#96 · Filter by author axiomcura opened on Nov 8, 2023

• Reduce Code Duplication Due To Profiling Design

  WayScience/CytoSnake#95 · Filter by author axiomcura opened on Nov 8, 2023

• Create CI workflows to test on other types of OS

  WayScience/CytoSnake#94 · Filter by author axiomcura opened on Nov 8, 2023

• Create functional tests for benchmarking

  testing
  WayScience/CytoSnake#93 · Filter by author axiomcura opened on Nov 1, 2023

• Create documentation for Unit tests

  WayScience/CytoSnake#92 · Filter by author axiomcura opened on Nov 1, 2023

• Update config files with newly added Pycytominer None defaults

  Configs-issue
  WayScience/CytoSnake#91 · Filter by author axiomcura opened on Oct 25, 2023

• Remove iteration process in feature_select

  enhancement
  WayScience/CytoSnake#89 · Filter by author axiomcura opened on Oct 19, 2023
  1

  

• Use CI/CD tools to automatically synchronize the Bioconda version

  WayScience/CytoSnake#88 · Filter by author axiomcura opened on Sep 1, 2023

• Revamping get_input_path()

  enhancement
  WayScience/CytoSnake#86 · Filter by author axiomcura opened on Sep 1, 2023

• CytoSnake modules fails when using multiple inputs and generating one output due to get_data_path()

  bug
  WayScience/CytoSnake#85 · Filter by author axiomcura opened on Sep 1, 2023

• Update data storage locations

  enhancement
  WayScience/CytoSnake#84 · Filter by author axiomcura opened on Sep 1, 2023

• Develop a function that searches for plate map based on given plate name.

  enhancement
  WayScience/CytoSnake#83 · Filter by author axiomcura opened on Sep 1, 2023

• Establishing config standards for class methods

  Configs-issue
  WayScience/CytoSnake#82 · Filter by author axiomcura opened on Aug 31, 2023

• Allow whole config loading to scripts instead of partial loading.

  WayScience/CytoSnake#81 · Filter by author axiomcura opened on Aug 31, 2023
  1

• _path.yaml capturing empty keys

  WayScience/CytoSnake#80 · Filter by author axiomcura opened on Aug 30, 2023

• Standardize Path objects in CytoSnake with pathlib.Path objects.

  enhancement
  WayScience/CytoSnake#79 · Filter by author axiomcura opened on Aug 30, 2023
  1

  

• Adding Least Recently Used (LRU) caching to pathing functions

  enhancement
  WayScience/CytoSnake#76 · Filter by author axiomcura opened on Aug 14, 2023

• Findings from testing cytosnake in NF1 cell painting repo

  WayScience/CytoSnake#73 · Filter by author gwaybio opened on Jul 24, 2023
  

• CytoSnake "Concepts" diagram hides black text and arrows in dark mode

  WayScience/CytoSnake#67 · Filter by author MattsonCam opened on Jun 15, 2023

• Create a get_output() helper function

  WayScience/CytoSnake#62 · Filter by author axiomcura opened on May 23, 2023

• Make get_input() function more flexible

  WayScience/CytoSnake#61 · Filter by author axiomcura opened on May 23, 2023

• Add workflow parameters in general config file.

  enhancement
  WayScience/CytoSnake#57 · Filter by author axiomcura opened on May 17, 2023