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@andersen-lab

Andersen Laboratory @ Scripps Research

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  1. HCoV-19-Genomics HCoV-19-Genomics Public

    SARS-CoV-2 genomics

    16 6

  2. ivar ivar Public

    Forked from gkarthik/ivar

    iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.

    C++ 137 43

  3. Freyja Freyja Public

    Depth-weighted De-Mixing

    HTML 134 38

  4. avian-influenza avian-influenza Public

    Consensus sequences for U.S. H5N1 clade 2.3.4.4b

    38 10

  5. MPXV_wastewater_sequencing MPXV_wastewater_sequencing Public

    Python 3 2

Repositories

Showing 10 of 69 repositories
  • Freyja-data Public
    andersen-lab/Freyja-data's past year of commit activity
    Python 0 0 0 0 Updated Sep 10, 2026
  • Freyja-nf Public Forked from andersen-lab/Freyja-SC2

    nextflow pipeline for NICD wastewater surveillance

    andersen-lab/Freyja-nf's past year of commit activity
    Nextflow 1 GPL-3.0 6 0 0 Updated Sep 10, 2026
  • Freyja Public

    Depth-weighted De-Mixing

    andersen-lab/Freyja's past year of commit activity
    HTML 134 BSD-2-Clause 38 5 1 Updated Sep 10, 2026
  • covasim4wastewater Public Forked from starsimhub/covasim

    Expanding on Covasim for wastewater genomic epidemiology

    andersen-lab/covasim4wastewater's past year of commit activity
    Python 2 MIT 239 0 3 Updated Sep 9, 2026
  • avian-influenza Public

    Consensus sequences for U.S. H5N1 clade 2.3.4.4b

    andersen-lab/avian-influenza's past year of commit activity
    38 10 1 0 Updated Sep 9, 2026
  • ivar Public Forked from gkarthik/ivar

    iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.

    andersen-lab/ivar's past year of commit activity
    C++ 137 GPL-3.0 45 43 9 Updated Sep 8, 2026
  • Bygul Public

    Amplicon read simulator

    andersen-lab/Bygul's past year of commit activity
    Python 4 BSD-2-Clause 1 1 0 Updated Sep 8, 2026
  • Freyja-SC2 Public
    andersen-lab/Freyja-SC2's past year of commit activity
    Python 7 GPL-3.0 6 0 0 Updated Aug 24, 2026
  • covariants-paper Public
    andersen-lab/covariants-paper's past year of commit activity
    Jupyter Notebook 0 BSD-2-Clause 0 0 0 Updated Aug 7, 2026
  • spike_barcodes Public
    andersen-lab/spike_barcodes's past year of commit activity
    HTML 0 0 0 0 Updated Jul 24, 2026
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