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cellgeni
adata-cli
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B8c: Pickles, spatial and images
- #120
#120
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Nov 3, 2026
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B8c: Pickles, spatial and images
#120
Claptar
merged 10 commits into
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cellgeni/adata-cli:main
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fix/b8c
cellgeni/adata-cli:fix/b8c
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Commits on Nov 2, 2026
Harden pickle reading (F038, F040, F140)
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Bound imputed-matrix blocks and chunks; honour --dense for a sparse mtx (F007, F025, F100)
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Unpack a Xenium analysis.tar.gz in the output's nearest existing folder (F112)
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Keep 16-bit images in export image; refuse what an image cannot hold, or --scale (F066)
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Document export image's values and --scale, pickle checks, imputed blocks
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Check the dense-from-sparse test leaves no scratch, on every backend
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Merge remote-tracking branch 'origin/main' into fix/b8c
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Review fixes: pickle reading hardened further; read a wide cell once
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Name the file when numpy, scipy or pandas cannot read a pickle
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Merge remote-tracking branch 'origin/main' into fix/b8c
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