gyanezfeliu · Oct 11, 2026 · Oct 9, 2026 · Oct 9, 2026 · Oct 9, 2026 · Oct 9, 2026
diff --git a/CellModeller/gui/renderers.py b/CellModeller/gui/renderers.py
diff --git a/README.md b/README.md
@@ -1,8 +1,8 @@
 # CellModeller
 
-[![Contributor Covenant](https://img.shields.io/badge/Contributor%20Covenant-2.1-4baaaa.svg)](Community/code_of_conduct.md)
+[![Contributor Covenant](https://img.shields.io/badge/Contributor%20Covenant-2.1-4baaaa.svg)](community/code_of_conduct.md)
 =============
 Multicellular modelling framework, created by Tim Rudge, PJ Steiner, and Jim Haseloff, University of Cambridge.
 
-- [Contributing](Community/contributing.md)
-- [Code of Conduct](Community/code_of_conduct.md)
+- [Contributing](community/contributing.md)
+- [Code of Conduct](community/code_of_conduct.md)
diff --git a/Scripts/batch_iter.py b/Scripts/batch_iter.py
diff --git a/Scripts/contact_graph.py b/Scripts/contact_graph.py
diff --git a/Scripts/length_histogram.py b/Scripts/length_histogram.py
diff --git a/Scripts/print_timing.py b/Scripts/print_timing.py
diff --git a/Scripts/spatial_analyze.py b/Scripts/spatial_analyze.py
diff --git a/CellModeller/Regulation/__init__.py → cellmodeller/__init__.py b/CellModeller/Regulation/__init__.py → cellmodeller/__init__.py
diff --git a/CellModeller/cell_state.py → cellmodeller/cell_state.py b/CellModeller/cell_state.py → cellmodeller/cell_state.py
@@ -1,12 +1,11 @@
-
 class CellState:
     # Don't show these attributes in gui
-    excludeAttr = ['id', 'divideFlag', 'ends','cellAdh']
+    excludeAttr = ["id", "divideFlag", "ends", "cellAdh"]
 
     def __init__(self, cid):
         self.id = cid
         self.growthRate = 1.0
-        self.color = [0.5,0.5,0.5]
+        self.color = [0.5, 0.5, 0.5]
         self.divideFlag = False
         self.cellAge = 0
         self.neighbours = []

diff --git a/CellModeller/__init__.py → cellmodeller/gui/__init__.py b/CellModeller/__init__.py → cellmodeller/gui/__init__.py