Issues

• Harmony v2 version update

  corceslab/CHOIR#49 · Filter by author KarlKaise opened on May 4, 2026
  1

• Parallelization using {mori}

  corceslab/CHOIR#48 · Filter by author BiotechPedro opened on Apr 27, 2026

• Error when max_clusters != "auto"

  corceslab/CHOIR#47 · Filter by author sian-wood opened on Mar 17, 2026

• It takes a long time to run on both Windows and the SCC, and in practice it only uses a single core.

  corceslab/CHOIR#46 · Filter by author YifanWang-BU opened on Mar 2, 2026

• CHOIR Fails with Leiden Clustering

  corceslab/CHOIR#45 · Filter by author marcobuttigieg opened on Oct 19, 2025

• It takes more than 6 hours for CHOIR dealing with 170k cells using 100 CPUs?

  corceslab/CHOIR#44 · Filter by author LongpanICR opened on Aug 8, 2025

• CHOIR yielded ~50 T-cell clusters—expected or over-splitting?

  corceslab/CHOIR#42 · Filter by author laleoarrow opened on Jul 10, 2025
  1

• Can I use plotCHOIR to show the prediction accuracy scores of my pre-generated clusters?

  corceslab/CHOIR#40 · Filter by author FY10086 opened on Jun 14, 2025
  1

• Mat::submat(): indices out of bounds or incorrectly used

  corceslab/CHOIR#39 · Filter by author YanCheer opened on May 24, 2025

• Error in if (child_partner1_mean_accuracy > child_partner2_mean_accuracy) { : missing value where TRUE/FALSE needed

  corceslab/CHOIR#36 · Filter by author alifarhat40 opened on Apr 20, 2025
  5

• Problems with sketch Seurat object

  corceslab/CHOIR#32 · Filter by author maggiebr0wn opened on Apr 15, 2025
  2

• Pruning stuck checking for underclustering

  corceslab/CHOIR#29 · Filter by author doliv071 opened on Apr 9, 2025
  8

• Inconsistency between CHOIR clusters with Harmony Integration

  corceslab/CHOIR#26 · Filter by author alifarhat40 opened on Apr 8, 2025
  5

• Unexpectledly large number of clusters

  corceslab/CHOIR#7 · Filter by author smorabit opened on Jan 31, 2024
  6