Issues

• We’re deprecating scanpy.external

  dpeerlab/Harmony#27 · Filter by author flying-sheep opened on Aug 14, 2026

• matplotlib has trouble

  dpeerlab/Harmony#24 · Filter by author RijndertAriese opened on Sep 9, 2024

• Unable to reproduce the result shown in the demo notebook

  dpeerlab/Harmony#23 · Filter by author jzw1999 opened on Jun 28, 2024
  2

• Installation error

  dpeerlab/Harmony#22 · Filter by author anke-king opened on Mar 11, 2024
  2

• RuntimeWarning: divide by zero encountered in true_divide dists = dists ** 2/(scaling_factors.values[rows] ** 2)

  dpeerlab/Harmony#20 · Filter by author fangfang0906 opened on Mar 8, 2022
  1

• scikit-learn dependency

  dpeerlab/Harmony#16 · Filter by author adamgayoso opened on Nov 9, 2020
  4

• Harmony data pre-processing and time connection

  dpeerlab/Harmony#15 · Filter by author pengyu1608 opened on Jul 6, 2020
  2

• Ordering of the timepoints

  dpeerlab/Harmony#14 · Filter by author Marius1311 opened on May 25, 2020
  2

• Meaning and function of the n_components parameter

  dpeerlab/Harmony#13 · Filter by author Marius1311 opened on May 25, 2020
  1