Issues

• Making BSseqTstat and BSseqStat inherit from GRanges instead of hasGRanges has significant benefits

  hansenlab/bsseq#158 · Filter by author hpages opened on Oct 1, 2026

• Questions related to BSmooth error: encountered errors: 2 of 2 smoothing tasks failed.

  hansenlab/bsseq#151 · Filter by author Lxia626 opened on Jul 29, 2025
  4

• bedMethyl file read

  hansenlab/bsseq#148 · Filter by author SmirnygaTotoshka opened on Jun 13, 2025

• group1.mean and group2.mean do not fit with mean meth values per DMR (in-script)

  hansenlab/bsseq#147 · Filter by author RicardoMartins-Ferreira opened on May 23, 2025
  4

• unable to access the BSmooth.fstat function

  hansenlab/bsseq#144 · Filter by author victoriaserelli opened on Jan 27, 2025
  2

• read.bismark doesn't finish with new R.

  hansenlab/bsseq#142 · Filter by author desmodus1984 opened on Sep 23, 2024
  1

• Reading H5 files directly

  hansenlab/bsseq#124 · Filter by author boooooogey opened on Jun 8, 2023
  3

• Updating beachmat to tatami

  hansenlab/bsseq#121 · Filter by author LTLA opened on May 31, 2023
  1

• combineList: BACKEND Argument not working as intended

  bug
  hansenlab/bsseq#119 · Filter by author Apompetti-Cori opened on Apr 8, 2023
  1

• BSmooth with HDF5 realization backend error: Stop worker failed with the error: wrong args for environment subassignment

  hansenlab/bsseq#118 · Filter by author Apompetti-Cori opened on Apr 5, 2023
  5

• Normalization of the WGBS smooth data

  hansenlab/bsseq#114 · Filter by author priyatamapandey opened on Aug 19, 2022
  6

• Error: C stack usage 10847362 is too close to the limit

  hansenlab/bsseq#111 · Filter by author Carota-1 opened on Apr 8, 2022
  3

• BSmooth - Error in env[[as.character(i)]] <- value : wrong args for environment subassignment

  hansenlab/bsseq#110 · Filter by author ciganche opened on Apr 5, 2022
  2

• BSmooth.tstat error, Error in compute.correction

  hansenlab/bsseq#108 · Filter by author yang-mj opened on Mar 23, 2022
  5

• Error in BSmooth.tstat - stopifnot(length(group1) + length(group2) >= 3)

  hansenlab/bsseq#106 · Filter by author wangjingwan opened on Jan 26, 2022
  3

• BSmooth error

  hansenlab/bsseq#104 · Filter by author priyatamapandey opened on Sep 29, 2021
  24

• Error in dmrFinder: 'stat' needs to be a column of 'bstat@stats'

  hansenlab/bsseq#103 · Filter by author RRebo opened on Jul 8, 2021
  1

• HDF5-backed objects saved with a "prefix" fail to smooth

  hansenlab/bsseq#98 · Filter by author Nick-Eagles opened on Oct 12, 2020
  2

• getMeth relation to CpGs

  hansenlab/bsseq#96 · Filter by author ravitharakan opened on Aug 3, 2020
  1

• BSseq Constructor fails if rmZeroCov = TRUE

  hansenlab/bsseq#95 · Filter by author mdperry opened on Jul 23, 2020
  1

• Error in combining multiple bsseq objects

  hansenlab/bsseq#94 · Filter by author katiearacena opened on Jul 22, 2020
  5

• read.bismark errors and warnings for large number of files

  hansenlab/bsseq#93 · Filter by author shawpa opened on Jul 9, 2020
  2

• BSmooth.tstat error, Error in preplot.locfit.raw(....

  hansenlab/bsseq#90 · Filter by author shawpa opened on Mar 18, 2020
  7

• Possible to find DMRs for FisherTest

  hansenlab/bsseq#89 · Filter by author npatel22526 opened on Feb 6, 2020

• Size of combined BSSeq objects

  hansenlab/bsseq#88 · Filter by author kperzel opened on Oct 17, 2019
  1