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Harvard Informatics

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  1. learning-bioinformatics-at-home learning-bioinformatics-at-home Public

    resources for learning bioinformatics

    1.7k 275

  2. JAuth JAuth Public

    Java GUI client to generate Google authentication codes

    Java 202 50

  3. bioinformatics-coffee-hour bioinformatics-coffee-hour Public

    Short lessons from FAS Informatics coffee hour

    HTML 161 49

  4. ATAC-seq ATAC-seq Public

    Python 148 42

  5. snparcher snparcher Public

    Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.

    Python 96 39

  6. GenomeAnnotation GenomeAnnotation Public

    Best practices and workflow for genome annotation

    Python 80 14

Repositories

Showing 10 of 191 repositories
  • snparcher Public

    Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.

    harvardinformatics/snparcher's past year of commit activity
    Python 96 MIT 39 15 1 Updated Oct 19, 2026
  • AllAsia-Symbiota Public Forked from Symbiota/Symbiota

    The Symbiota Virtual Flora/Fauna project is an open source software project, with central goal of developing on-line tools that aid in the generation, exploration and management of biodiversity data (collection specimens, observations, images, checklist, keys, etc.). See also: http://bdj.pensoft.net/articles.php?id=1114 and http://symbiota.org/

    harvardinformatics/AllAsia-Symbiota's past year of commit activity
    JavaScript 0 GPL-2.0 110 0 0 Updated Oct 19, 2026
  • informatics-website Public

    FAS Informatics website

    harvardinformatics/informatics-website's past year of commit activity
    TeX 2 MIT 2 1 0 Updated Oct 19, 2026
  • python-intensive Public

    FAS Informatics Python Workshop

    harvardinformatics/python-intensive's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Oct 15, 2026
  • scRNAseq-preprocessing Public

    Documentation of and code for analyses performed to assess the effect of different methods for cleanup and pre-processing of raw scRNAseq data on downtream analyses.

    harvardinformatics/scRNAseq-preprocessing's past year of commit activity
    Python 0 1 0 0 Updated Oct 15, 2026
  • EndoriftiaTranscriptomics Public

    Code used in data analysis for Mitchell et al. 2024, a forthcoming paper on transcriptomic responses to environmental variation in *Candidatus Endoriftia persephone*, a bacterial symbiont of the deep sea tubeworm *Riftia pachyptila*.

    harvardinformatics/EndoriftiaTranscriptomics's past year of commit activity
    HTML 0 0 0 0 Updated Oct 13, 2026
  • data-concierge-file-audit Public

    Claude Code skill: read-only audit of a lab's FASRC storage for FAS Informatics Data Concierge

    harvardinformatics/data-concierge-file-audit's past year of commit activity
    Python 0 0 0 0 Updated Oct 2, 2026
  • ifxvue Public

    Harvard FAS Informatics Vue JS components

    harvardinformatics/ifxvue's past year of commit activity
    Vue 0 GPL-2.0 0 0 10 Updated Oct 2, 2026
  • harvardinformatics/NEMO-CE-7.2.11's past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 30, 2026
  • harvardinformatics/NEMO-CE-7.4.17's past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 30, 2026

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