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  1. SCORPION SCORPION Public

    Single Cell Oriented Reconstruction of PANDA-based Individually Optimized Networks

    R 28 5

  2. retriever retriever Public

    Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data

    R 18 1

  3. PySNAIL PySNAIL Public

    Smooth-quantile Normalization Adaptation for Inference of co-expression Links

    Python 17 1

  4. lionessR lionessR Public

    Forked from mararie/lionessR

    Single sample network reconstruction in R

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  5. CAVACHON CAVACHON Public

    Cell cluster Analysis with Variational Autoencoder using Conditional Hierarchy Of latent representioN

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  6. sponge sponge Public

    Python package to generate prior gene regulatory networks.

    Python 4 1

Repositories

Showing 10 of 24 repositories
  • SCORPION Public

    Single Cell Oriented Reconstruction of PANDA-based Individually Optimized Networks

    kuijjerlab/SCORPION's past year of commit activity
    R 28 GPL-3.0 5 1 0 Updated Oct 15, 2026
  • sponge Public

    Python package to generate prior gene regulatory networks.

    kuijjerlab/sponge's past year of commit activity
    Python 4 GPL-3.0 1 1 0 Updated Sep 30, 2026
  • pySCORPION Public

    Single Cell Oriented Reconstruction of PANDA-based Individually Optimized Networks

    kuijjerlab/pySCORPION's past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Sep 29, 2026
  • retriever Public

    Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data

    kuijjerlab/retriever's past year of commit activity
    R 18 1 0 0 Updated Sep 25, 2026
  • sisana Public

    Single Sample Network Analysis

    kuijjerlab/sisana's past year of commit activity
    Python 2 MIT 2 3 0 Updated Sep 9, 2026
  • kuijjerlab/MasterThesis_Turan's past year of commit activity
    0 0 0 0 Updated Apr 28, 2026
  • MARMOT Public
    kuijjerlab/MARMOT's past year of commit activity
    R 1 GPL-3.0 0 0 0 Updated Feb 9, 2026
  • multi-omics-course Public

    Repository for the multi-omics course

    kuijjerlab/multi-omics-course's past year of commit activity
    HTML 3 MIT 0 0 0 Updated Nov 11, 2025
  • JDRnet Public

    This is a repository for reproducing the analysis in the paper: *title + doi*

    kuijjerlab/JDRnet's past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Oct 29, 2025
  • PANGOLIN Public

    this includes the pan-cancer analysis of gene regulatory landscape

    kuijjerlab/PANGOLIN's past year of commit activity
    R 1 MIT 1 0 0 Updated Oct 3, 2025

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