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@labsyspharm

Laboratory of Systems Pharmacology @ Harvard

Reinventing the fundamental science underlying the development of new medicines and their use in individual patients.

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  1. ashlar ashlar Public

    ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration

    Python 183 57

  2. mcmicro mcmicro Public

    Multiple-choice microscopy pipeline

    Nextflow 156 64

  3. scimap scimap Public

    Spatial Single-Cell Analysis Toolkit

    Python 116 38

  4. palom palom Public

    Piecewise alignment for layers of mosaics

    Python 68 13

  5. minerva-story minerva-story Public

    Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue images.

    HTML 58 14

  6. orion-crc orion-crc Public

    MATLAB 37 4

Repositories

Showing 10 of 188 repositories
  • minerva-core-ui Public

    A microscopy viewer for non-experts

    labsyspharm/minerva-core-ui's past year of commit activity
    TypeScript 1 MIT 4 24 5 Updated Nov 5, 2026
  • okl-analysis Public
    labsyspharm/okl-analysis's past year of commit activity
    Python 0 1 0 0 Updated Oct 29, 2026
  • 2025-Vallius-Shi-Novikov-melanoma-PCAII Public

    Custom codes for Vallius, Shi, Novikov et al. manuscript 2025

    labsyspharm/2025-Vallius-Shi-Novikov-melanoma-PCAII's past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Oct 28, 2026
  • scimap Public

    Spatial Single-Cell Analysis Toolkit

    labsyspharm/scimap's past year of commit activity
    Python 116 MIT 38 47 6 Updated Oct 26, 2026
  • minerva-author Public

    Tool to create images and configuration files for Minerva-Story

    labsyspharm/minerva-author's past year of commit activity
    Python 16 MIT 16 29 4 Updated Oct 23, 2026
  • cycif.org Public

    cycif.org GitHub Pages Website

    labsyspharm/cycif.org's past year of commit activity
    JavaScript 3 MIT 9 6 4 Updated Oct 23, 2026
  • ad-rna-editing Public
    labsyspharm/ad-rna-editing's past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Oct 23, 2026
  • stic-ms-2026 Public

    Gray Precancer Atlas v 2.0_KADER_Santagata Lab

    labsyspharm/stic-ms-2026's past year of commit activity
    R 0 0 0 0 Updated Oct 22, 2026
  • TB-3D-TLS-2026 Public

    Modeling development of tertiary lymphoid structures in pulmonary tuberculosis by 3D profiling and trajectory analysis

    labsyspharm/TB-3D-TLS-2026's past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Oct 19, 2026
  • mcmicro Public

    Multiple-choice microscopy pipeline

    labsyspharm/mcmicro's past year of commit activity
    Nextflow 156 MIT 64 65 3 Updated Oct 17, 2026
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