Max Perutz Labs - Mass Spectrometry Facility
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Repositories
- rawtrace-qc Public
Generate interactive total ion current (TIC) and scan-level HTML reports from Thermo and Bruker mass spectrometry raw files.
- thermo-scan-header-extractor Public
A Windows command-line tool that extracts compact scan-header metadata from Thermo `.raw` files.
- self-documenting-workflows Public
Our facility's best practices, guidelines, and tools supporting reproducible and self-documenting proteomics research.
- InterferenceModeling_in_MultiplexProteomics Public Forked from moritzmadern/InterferenceModeling_in_MultiplexProteomics
Workflow to perform interference modeling and interference correction for MS2-based multiplex proteomics data
- SiteToProteinNormalization_in_MultiplexProteomics Public Forked from moritzmadern/SiteToProteinNormalization_in_MultiplexProteomics
Workflow to perform unbiased site-to-protein normalization in multiplex proteomics by accounting for ratio compression effects due to ion interference
- perutz-ms-contaminants Public
Central repository for organizing the custom FASTA contaminants files used in the Max Perutz Labs - MS Facility
- spectronaut-runner Public
A Python library to simplify and support the execution of Spectronaut when running in command-line mode.
- fragpipe-runner Public
A Python library to simplify and support the execution of FragPipe when running in command-line mode.
- Cassiopeia_LFQ Public Forked from moritzmadern/Cassiopeia_LFQ
R script to perform standard analysis steps for label-free proteomics data
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