Issues

• Automatic cross CI once docker container has been built

  enhancement
  nf-core/deepmodeloptim#242 · Filter by author mathysgrapotte opened on Mar 24, 2025
  1

• Collect all versions and pass them correctly to MultiQC

  enhancement
  nf-core/deepmodeloptim#238 · Filter by author luisas opened on Mar 20, 2025

• create toolsheet for preprocessing

  nf-core/deepmodeloptim#224 · Filter by author suzannejin opened on Feb 19, 2025
  

• [enhancement] do .yaml config parsing and puting into channels in groovy instead of python

  enhancement
  nf-core/deepmodeloptim#205 · Filter by author mathysgrapotte opened on Oct 29, 2024

• Turn torch_tune into an nf-core module

  enhancementgood first issue
  nf-core/deepmodeloptim#201 · Filter by author JoseEspinosa opened on Oct 23, 2024
  

• Turn stimulus_transform_csv into an nf-core module

  enhancementgood first issue
  nf-core/deepmodeloptim#200 · Filter by author JoseEspinosa opened on Oct 23, 2024
  

• Turn stimulus_split_csv into an nf-core module

  enhancementgood first issue
  nf-core/deepmodeloptim#199 · Filter by author JoseEspinosa opened on Oct 23, 2024
  

• Turn check_torch_model into an nf-core module

  enhancementgood first issue
  nf-core/deepmodeloptim#197 · Filter by author JoseEspinosa opened on Oct 23, 2024
  

• [future][discussion] deal with data located in files

  enhancement
  nf-core/deepmodeloptim#196 · Filter by author mathysgrapotte opened on Oct 23, 2024

• [future][discussion] how to incorporate external modules ?

  enhancementhelp wanted
  nf-core/deepmodeloptim#195 · Filter by author mathysgrapotte opened on Oct 23, 2024

• Turn the following modules into nf-core modules

  enhancement
  nf-core/deepmodeloptim#194 · Filter by author mathysgrapotte opened on Oct 23, 2024

• Fix nf-test after nf-core migration

  buggood first issue
  nf-core/deepmodeloptim#193 · Filter by author JoseEspinosa opened on Oct 23, 2024

• Update test_full.config

  enhancement
  nf-core/deepmodeloptim#188 · Filter by author JoseEspinosa opened on Oct 23, 2024

• Add a real test data set for full testing

  enhancement
  nf-core/deepmodeloptim#187 · Filter by author JoseEspinosa opened on Oct 23, 2024

• Implement nf-core full tests

  enhancement
  nf-core/deepmodeloptim#186 · Filter by author JoseEspinosa opened on Oct 23, 2024

• Update USAGE.md and OUPUT.md

  documentationenhancement
  nf-core/deepmodeloptim#185 · Filter by author JoseEspinosa opened on Oct 23, 2024
  1

• [feature] add logging functionalities

  enhancement
  nf-core/deepmodeloptim#138 · Filter by author mathysgrapotte opened on May 14, 2024

• [nf-tests] Assure reproducibility

  high priority
  nf-core/deepmodeloptim#55 · Filter by author suzannejin opened on Apr 17, 2024
  3