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@quinlan-lab

quinlan-lab

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  1. bedqc bedqc Public

    BED QC tool (in the making)

    HTML 18 2

  2. bedder-rs bedder-rs Public

    an API for intersections of genomic data

    Rust 149 4

Repositories

Showing 10 of 46 repositories
  • bedder-rs Public

    an API for intersections of genomic data

    quinlan-lab/bedder-rs's past year of commit activity
    Rust 149 MIT 4 5 0 Updated Oct 4, 2026
  • CIDR_preprocessing Public
    quinlan-lab/CIDR_preprocessing's past year of commit activity
    Python 0 0 0 0 Updated Sep 29, 2026
  • vcf-to-csv Public
    quinlan-lab/vcf-to-csv's past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 25, 2026
  • HiFi-human-WGS-WDL Public Forked from PacificBiosciences/HiFi-human-WGS-WDL

    Fork to remove tools we don't need

    quinlan-lab/HiFi-human-WGS-WDL's past year of commit activity
    WDL 1 BSD-3-Clause-Clear 58 0 0 Updated Sep 18, 2026
  • tapestry Public

    Weaving DNA methylation data onto the genetic background of human pedigrees and trios

    quinlan-lab/tapestry's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Sep 15, 2026
  • constraint-tools Public

    Tools to discover natural selection given multiple evolved DNA sequences (e.g., gnomad cohort, or multiple tumor samples)

    quinlan-lab/constraint-tools's past year of commit activity
    Jupyter Notebook 1 MIT 0 8 0 Updated Aug 25, 2026
  • tapestry-tools Public

    Tools to process DNA methylation from HiFi reads that have been phased to the haplotypes of the pedigree's founders.

    quinlan-lab/tapestry-tools's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated May 15, 2026
  • wdl-common Public Forked from PacificBiosciences/wdl-common

    Fork to remove tools we don't need

    quinlan-lab/wdl-common's past year of commit activity
    WDL 0 BSD-3-Clause-Clear 16 0 0 Updated Dec 22, 2025
  • STRling Public

    Detect novel (and reference) STR expansions from short-read data

    quinlan-lab/STRling's past year of commit activity
    Nim 72 MIT 10 21 (2 issues need help) 2 Updated Dec 6, 2025
  • Snakemake_Tutorial Public
    quinlan-lab/Snakemake_Tutorial's past year of commit activity
    Python 13 0 0 0 Updated Mar 25, 2025
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