Issues

• Could iCount xlsites support soft-clipping?

  tomazc/iCount#215 · Filter by author TomSmithCGAT opened on Mar 11, 2024

• AssertionError : assert current_gene not in gene_ids

  tomazc/iCount#214 · Filter by author rnaomics opened on Feb 27, 2024

• Assertion error : assert starts == sorted(starts)

  tomazc/iCount#213 · Filter by author rnaomics opened on Feb 27, 2024

• Help with installation

  tomazc/iCount#212 · Filter by author valerieT1998 opened on Mar 29, 2023
  1

• How to cite update

  tomazc/iCount#210 · Filter by author michaelmhoffman opened on May 30, 2022

• iCount xlsites--many reads with second-start not falling on segmentation

  tomazc/iCount#209 · Filter by author ryanmarina opened on May 27, 2022

• iCount demultiplex --minimum_length cannot work

  tomazc/iCount#207 · Filter by author wjzhangiris opened on Sep 14, 2021

• issue with indexstar

  tomazc/iCount#206 · Filter by author vd77 opened on Sep 3, 2021

• Setup fails with pip install

  tomazc/iCount#199 · Filter by author SamBryce-Smith opened on May 11, 2020
  2

• Question: iCount xlsites expected runtime

  tomazc/iCount#191 · Filter by author mirax87 opened on Mar 27, 2019
  2

• segment:error in gene level segmentation

  tomazc/iCount#186 · Filter by author snk9987 opened on Jul 19, 2018
  1

• Definitions from 'summary' tool

  tomazc/iCount#158 · Filter by author raflynn opened on Aug 15, 2017
  1

• Memory Issue - Running 'peaks' tool

  tomazc/iCount#157 · Filter by author raflynn opened on Aug 15, 2017

• Support Prokaryotic Genomes

  tomazc/iCount#139 · Filter by author Faitero opened on May 15, 2017
  5

• Support custom arguments in mapstar and indexstar

  enhancement
  tomazc/iCount#134 · Filter by author JureZmrzlikar opened on Feb 21, 2017
  

• Problems connecting to ENSEMBL FTP server

  tomazc/iCount#130 · Filter by author Faitero opened on Feb 7, 2017
  4

• Pretty print CLI help

  enhancement
  tomazc/iCount#86 · Filter by author JureZmrzlikar opened on Oct 6, 2016 · f3 gray
  

• Autocomplete

  enhancement
  tomazc/iCount#73 · Filter by author JureZmrzlikar opened on Sep 21, 2016 · f3 gray
  1

• Add kmer enrichment analysis

  tomazc/iCount#20 · Filter by author tomazc opened on Jul 26, 2016 · f3 gray
  

• Obtain iCLIP data from archives (ENA, ENCODE, any URL, ...)

  tomazc/iCount#8 · Filter by author tomazc opened on Jul 26, 2016 · f3 gray
  1