The simplest, fastest software for studying gene regulation in single-cell data. Core SCENIC and SCENIC+ rewritten in Rust, with a Python API. Built and scaled with the Huang Lab at Mount Sinai.
python rust bioinformatics transcription-factors gene-regulation scrna-seq atac-seq single-cell single-cell-analysis gene-regulatory-network multiomics pyo3 scenic scatac-seq anndata maturin pyscenic aucell regulon scenicplus
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Updated
Nov 1, 2026 - Python