Python library for diffraction tomography with the Born and Rytov approximations
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Mar 31, 2025 - Python
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single-cell-imaging
Here are 9 public repositories matching this topic...
EWALD: optical diffraction tomography reconstruction software
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Jul 18, 2024 - MATLAB
FLIM-focused framework for multimodal single-cell imaging: extract features from FLIM and QPI data, then analyze any tabular dataset interactively.
python tabular-data scientific-visualization feature-extraction data-analysis microscopy umap cell-analysis flim quantitative-phase-imaging single-cell-imaging single-cell-analysis bioimage-analysis streamlit multimodal-imaging multimodal-analysis phasor-analysis fluorescence-lifetime-imaging
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Oct 26, 2026 - Python
Pseudotime analysis for time-series single-cell sequencing and imaging data
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Oct 29, 2026 - Jupyter Notebook
A precision tracking tool for bacillus cell tracking
image-processing single-cell-imaging spatiotemporal-analysis time-lapse-microscopy microbial-cell-tracking cell-lineage-analysis
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Nov 26, 2025 - HTML
This repository contains the Python modules and scripts to reproduce the results in the paper "Catanach, Vo, Munsky. IJUQ 2020."
inference bayesian bayesian-inference mcmc markov-chain-monte-carlo sequential-monte-carlo single-cell-imaging chemical-master-equation multifidelity stochastic-reaction-networks smfish
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Jul 28, 2021 - Jupyter Notebook
A precision tracking tool for bacillus cell tracking
image-processing single-cell-imaging spatiotemporal-analysis time-lapse-microscopy microbial-cell-tracking cell-lineage-analysis
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Nov 26, 2025 - HTML
New version of IGM - integrative Genome Modeling
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Jan 16, 2026 - Python
3D Swin Transformer voxel encoder + ClinicalBERT finding-text encoder (VoxelSwinCLAIP), contrastively trained (LoRA + symmetric InfoNCE) on single-cell 3D confocal fluorescence volumes from the Allen Institute's public hiPSC single-cell image dataset, paired with template-generated structural finding text.
representation-learning 3d-vision multimodal-learning single-cell-imaging confocal-microscopy clinicalbert contrastive-learning swin-transformer vision-language-model biomedical-ai
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Nov 2, 2026 - Python
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