smlm

A collection of tools for painting super-resolution images

This is the official implementation of our publication "Deep learning enables fast and dense single-molecule localization with high accuracy" (Nature Methods)

Adaptive Optics plugin for MicroManager

Single Molecule Imaging Simulator with Advanced Fluorophore Photophysics

An ImageJ plugin that uses the Projected-line FWHM resolution method to determine the image resolution of a final image.

Superresolution visualization of 3D protein localization data from a range of microscopes

This is the original repo of the DECODE implementation (mirrored by github.com/TuragaLab/DECODE).

SUSE Multi-Linux Manager hands-on workshop

Towards enhanced particle averaging for single-molecule localization microscopy using geometric deep learning

Software to process single-molecule and diffraction-limited polarisation camera image data.

Localization Analyzer for Nanoscale Distributions (LAND) - 2D and 3D Analysis of SMLM Data

ImageJ 1.x implementation of a 3D real-time single molecule localization microscopy algorithm based on lookup tables

Ansible Collection for SUSE Multi-Linux Manager (formerly SUSE Manager)

Object / density detection in astigmatic superresolution dSTORM microscopy

Uses Catmull Rom Splines optimisation to align multiple channels in Single Molecule Localization Microscopy (or Super Resolution Microscopy). Done as part of the Thesis of Mels Habold at the Quantative Nanoscopy group of Delft University of Technology in 2022.

FLIKA fork extended for SMLM, single-particle tracking, and calcium imaging

Superresolution visualization of 3D protein localization data from a range of microscopes . Mirror of https://github.com/bencardoen/smlmvis

SMLM-Pipeline-Suite (work in progress)

Modular pipeline combining DECODE localization, MAGIK tracking, and ROI-based calcium analysis