Issues

• All association tests have failed (Association tests on 324063 groups have completed. 324063 failed)

  vatlab/varianttools#151 · Filter by author marionamujal opened on Nov 10, 2020
  2

• Association analysis running but remains at 0% for hours

  vatlab/varianttools#150 · Filter by author marionamujal opened on Oct 12, 2020
  4

  

• KING 2.2.4

  vatlab/varianttools#148 · Filter by author ghost opened on Sep 20, 2020
  1

• KING pipeline does not work

  vatlab/varianttools#147 · Filter by author BoPeng opened on May 16, 2020
  5

• Python 3.8 use spawn as default method to create subprocesses.

  vatlab/varianttools#144 · Filter by author BoPeng opened on May 11, 2020
  3

• Switch Variant Tools from MD Anderson to a public hosting location (AWS?)

  vatlab/varianttools#143 · Filter by author BoPeng opened on May 11, 2020

• Association test with covariate depending on the gene-set

  vatlab/varianttools#142 · Filter by author fabiennejh opened on Apr 9, 2020
  4

• Fisher exact test pvalue and multiple testing

  vatlab/varianttools#139 · Filter by author freedomq8 opened on Jan 15, 2020
  9

• SKAT errors

  bug
  vatlab/varianttools#138 · Filter by author BoPeng opened on Jan 14, 2020
  6

• vtools access to annotation database

  vatlab/varianttools#137 · Filter by author BoPeng opened on Dec 18, 2019

• Error when output variants of samples with genotype value as filter criteria

  vatlab/varianttools#136 · Filter by author mullinyu opened on Dec 12, 2019
  1

• Documentation not viewable on cell phones

  vatlab/varianttools#134 · Filter by author BoPeng opened on Nov 6, 2019

• Add a edit in github button to documentation

  vatlab/varianttools#124 · Filter by author BoPeng opened on Oct 24, 2019

• gene set based burden test

  vatlab/varianttools#119 · Filter by author qserenali opened on Sep 23, 2019
  3

  

• database is locked

  vatlab/varianttools#117 · Filter by author qserenali opened on Sep 18, 2019
  1

  

• limit analysis based on selected region (bed file)

  vatlab/varianttools#114 · Filter by author freedomq8 opened on Jul 16, 2019
  1

• Faster access to HDF5 using vaex

  vatlab/varianttools#112 · Filter by author BoPeng opened on Jul 10, 2019
  1

• Finding more information on excluded variants

  vatlab/varianttools#105 · Filter by author BoPeng opened on May 16, 2019
  6

  

• Problem in creating a new annotation database dbNSFP v3_5a for hg19

  vatlab/varianttools#104 · Filter by author mullinyu opened on Apr 26, 2019
  13

• Cannot add DP to variant fields

  vatlab/varianttools#103 · Filter by author brankovicmarija opened on Apr 16, 2019
  8

  

• Size of genotype database

  vatlab/varianttools#99 · Filter by author gaow opened on Mar 22, 2019
  2

• Organization of genotype database

  vatlab/varianttools#98 · Filter by author gaow opened on Mar 22, 2019
  

• SKAT errors from the new version

  vatlab/varianttools#95 · Filter by author BoPeng opened on Mar 20, 2019
  19

• vtools associate qualtitative phenotypes

  vatlab/varianttools#91 · Filter by author fabiennejh opened on Feb 22, 2019
  8

• Error message too verbose by default

  vatlab/varianttools#90 · Filter by author gaow opened on Jan 23, 2019
  1