Skip to content
View ya-way's full-sized avatar
🎯
Focusing
🎯
Focusing
  • Shanghai Jiao Tong University

Highlights

  • Pro

Block or report ya-way

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Content in all repositories owned by your account will be closed.
Maximum 250 characters. Please don’t include any personal information such as legal names or email addresses. Markdown is supported. This note will only be visible to you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
ya-way/README.md

Shuotong Song

I'm an undergraduate in Health Science and Technology at Shanghai Jiao Tong University, interested in how AI can help us study and understand living systems.

My research interests include AI for biology, scientific agents, biological world models, and agent evaluation.

Email

Research contributions

VCWorld · Biological world models · ICLR 2026
Co-author. I reproduced scGPT and LowRankLinear perturbation-prediction baselines on Tahoe-100M, and built scripts to align LLM outputs into benchmark triplets and data splits across Qwen backbones and DE/DIR tasks. I also contributed to result analysis and figure preparation.
Paper · Code

OriGene · Biomedical multi-agent systems
I wrote agent-facing descriptions and documented return formats for 100+ biomedical tools, tested tool calls, assisted with deployment, and contributed to multi-agent architecture discussions.
Code · Project

Selected projects

  • Biomedical agent experiments — A constrained ReAct prototype with phenotype and literature tools, traceable reasoning trajectories, and a DeepRare-aligned evaluation harness.
  • CytoClaw — A skill library for single-cell bioinformatics workflows, connecting analysis, reports, and reproducible notebooks with Feishu.

Beyond research, I enjoy animals, literature, and photography.

Pinned Loading

  1. cytoclaw-skills cytoclaw-skills Public

    CytoClaw: a skill library for single-cell bioinformatics workflows, reproducible notebooks, and Feishu integration.

    Python

  2. autoimmune-agent-mvp autoimmune-agent-mvp Public

    Biomedical constrained ReAct prototype with phenotype and literature tools, traceable trajectories, and DeepRare-aligned evaluation.

    Python