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๐Ÿงฌ
Learning Bioinformatics
๐Ÿงฌ
Learning Bioinformatics

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zerostwo/README.md

Hey there, I'm Songqi ๐Ÿ‘‹

Songqi Duan (ๆฎตๆพๅฒ) ยท aka zerostwo

Trying to understand biology, one cell (and one bug) at a time.

I'm a PhD student at City of Hope, working in Ma Lab.

I spend my days somewhere between the wet lab and the terminal โ€” exploring the immune system, analyzing single-cell data, building computational tools, and occasionally breaking things in the name of science.

Biology is complicated. My code doesn't have to be. (Although sometimes it is.)

๐Ÿงฌ What keeps me busy

  • ๐Ÿ”ฌ Computational Immunology โ€” Exploring immune cell diversity, especially ILCs and NK cells.
  • ๐Ÿงฌ Single-cell & Spatial Omics โ€” Building cell atlases and mapping immune cells across tissues and diseases.
  • ๐Ÿงช Experimental Biology โ€” Studying how immune cells interact and respond to environmental signals.
  • ๐Ÿ’ป Open Source โ€” Building tools, automating workflows, and making bioinformatics a little less painful.
  • ๐Ÿค– AI for Biology โ€” Exploring how machine learning can help us understand complex biological systems.

โšก A few things about me

  • I like turning complicated biological questions into computational problems.
  • I believe a good visualization is worth a thousand lines of code.
  • I open-source things, break things, and sometimes even fix them.
  • My experiments have taught me that cells don't always read the protocol.
  • I spend an unreasonable amount of time making UMAPs look pretty.

๐Ÿพ Meet my supervisors

At home, my research is closely supervised by three highly qualified individuals.

Three furry supervisors. Zero publications. Unlimited authority.

Name Official Title Qualifications
๐Ÿถ Timi Chief Mouse Hunter Schnauzer. Actually catches mice. No training required.
๐Ÿˆ Piggy Chief Mischief Officer Cow cat. Cute face, suspicious intentions.
๐Ÿˆ Grogu Princess of the Force Elegant little sister. Big ears, bigger presence.

Timi catches mice. I study mice. Somehow, he's the expert.

๐Ÿ” Classified: Project 02 โ€” The Secret Lab

๐Ÿงช Confidential Laboratory Report

Project: ZERO TWO
Classification: TOP SECRET
Principal Investigator: Undisclosed (probably Piggy)

After extensive observations and several uncontrolled experiments, the following conclusions have been reached:

  • ๐Ÿถ Timi controls the perimeter. All mice must be approved by him.
  • ๐Ÿˆ Piggy is the mastermind. If something falls off a table, it was probably an experiment.
  • ๐Ÿˆ Grogu hears everything. Nothing escapes those ears.
  • ๐Ÿ‘จโ€๐Ÿ’ป Songqi writes the code, cleans the mess, and pays the bills.

Organizational Hierarchy

       ๐Ÿ‘‘ GROGU
     Supreme Royalty
           |
       ๐Ÿˆ PIGGY
     Chaos Director
           |
       ๐Ÿถ TIMI
    Head of Security
           |
       ๐Ÿ‘จโ€๐Ÿ’ป SONGQI
      Unpaid Intern

Experimental Results

Hypothesis Observation Conclusion
Timi is a good boy Confirmed p < 0.001
Piggy is innocent Insufficient evidence Reject H0
Grogu is a princess Universally accepted No further testing needed
Songqi owns the house Not supported Further investigation required

Final conclusion: The humans were never in charge.

May the paws be with you.

Secret access code: MOO-02

๐Ÿ“Š GitHub Stats

Songqi's GitHub stats

๐ŸŒ Find me elsewhere

  • ๐ŸŒ Website: songqi.org
  • ๐Ÿ’ป GitHub: @zerostwo
  • ๐Ÿ’ฌ Ask me about: Bioinformatics, immunology, open-source projects, or why my cats run the lab.

๐Ÿ’ป One last thing...
$ whoami
songqi / zerostwo

$ cat lab_config.txt
PI:          Piggy
Co-PI:       Grogu
Security:    Timi
Intern:      Songqi

$ run_experiment --expect reproducibility
Warning: Biology has other plans.

$ git status
On branch figuring-it-out
Your research is a work in progress.

$ echo "May the cells be with you."
May the cells be with you.

Made with curiosity, caffeine, and occasional interference from three furry supervisors. ๐Ÿพ

In the lab, I study cells.
At home, I'm being studied by two cats and a dog.

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