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Warning Newer version of the nf-core template is available. Your pipeline is using an old version of the nf-core template: 3.2.0. For more documentation on how to update your pipeline, please see the Synchronisation documentation. |
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This replaces the old fix-linting workflow (
.github/workflows/fix_linting.yml, or.github/workflows/fix-linting.ymlin pipelines created before nf-core/tools 3.3.0) with.github/workflows/fix-linting.yml, a short stub that calls the reusable fix-linting workflow from nf-core/actions (nf-core/tools#4485).The old workflow ran the pull request's own lint hooks in a job that also held the nf-core-bot token. The reusable workflow checks who asked for the fix, runs the pull request's code without any secrets, and pushes the result from a separate job that never runs pull request code.
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@nf-core-bot fix lintingon a PR works as before. The next template sync makes the same change ondev.